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Microbial evolution

Integrating gene expression data into a genome-scale metabolic model to identify reprogramming during adaptive evolution

Shaghayegh Yazdanpanah, Ehsan Motamedian, Seyed Abbas Shojaosadati

Covariance predicts conserved protein residue interactions important for the emergence and continued evolution of SARS-CoV-2 as a human pathogen

William P. Robins, John J. Mekalanos

Characterization of intra- and inter-host norovirus P2 genetic variability in linked individuals by amplicon sequencing

Aurora Sabrià, Rosa M. Pintó, [ ... ], the Working Group for the Study of Outbreaks of Acute Gastroenteritis in Catalonia

The Advantage of Arriving First: Characteristic Times in Finite Size Populations of Error-Prone Replicators

Arturo Marín, Héctor Tejero, Juan Carlos Nuño, Francisco Montero

Microbiome distribution modeling using gradient descent strategies for mock, in vitro and clinical community distributions

Juan Ricardo Velasco-Álvarez, Nimbe Torres y Torres, Isaac Chairez, José Luis Castrejón-Flores

Assessing Biases in the Evaluation of Classification Assays for HIV Infection Recency

Oscar Patterson-Lomba, Julia W. Wu, Marcello Pagano

Stable Heterogeneity for the Production of Diffusible Factors in Cell Populations

Marco Archetti

The number of domains in the ribosomal protein S1 as a hallmark of the phylogenetic grouping of bacteria

Andrey V. Machulin, Evgenia I. Deryusheva, Olga M. Selivanova, Oxana V. Galzitskaya

Heterogeneous Evolution of HIV-1 CRF01_AE in Men Who Have Sex with Men (MSM) and Other Populations in China

Xiaorong Peng, Haibo Wu, [ ... ], Nanping Wu

Role of efavirenz plasma concentrations on long-term HIV suppression and immune restoration in HIV-infected children

Nontiya Homkham, Tim R. Cressey, [ ... ], Gonzague Jourdain

Lexical Landscapes as large in silico data for examining advanced properties of fitness landscapes

Victor A. Meszaros, Miles D. Miller-Dickson, C. Brandon Ogbunugafor

Unveiling the endogenous CRISPR-Cas system in Pseudomonas aeruginosa PAO1

Javier Alejandro Delgado-Nungaray, Luis Joel Figueroa-Yáñez, [ ... ], Orfil Gonzalez-Reynoso

Characterization of West Nile virus Koutango lineage from phlebotomine sandflies in Kenya

Jane Wambui Thiiru, Solomon Langat, [ ... ], Fredrick Eyase

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