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Metabolic networks

Pairwise causal discovery in biochemical networks: A survey on directionality inference within complex networks from stationary observations

Nava Leibovich, Miroslava Cuperlovic-Culf

published 16 Jun 2026

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Non-targeted metabolomics reveals myocardial metabolic alterations in epileptic rats

Yue Hu, Yusen Wang, Qinghong Mao, Shisheng Zhu, Li Zhang

published 21 May 2026

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The identification of metabolites from gut microbiota in HPV infection via network pharmacology

Wenbo Dong, Bai Li, Zhiwei Xu, Qi Wang, Zhihui Hou, Hongling Jia

published 10 Apr 2026

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Dynamic metabolic modeling of Streptomyces clavuligerus in complex medium highlights nutrient-dependent metabolic transitions associated with clavulanic acid biosynthesis

Leon F. Toro-Navarro, Laura Pinilla-Mendoza, Rigoberto Ríos-Estepa

published 02 Feb 2026

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Reconstruction of a genome-scale metabolic model for Streptococcus zooepidemicus: Comparison with Corynebacterium glutamicum to study hyaluronic acid production

Zahra Nikuiyan, Fatemeh Tabandeh, Ehsan Motamedian, Saeed Salehi, Marjan Talebi, Rouzbeh Almasi Ghale

published 31 Dec 2025

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Integrative transcriptomics analysis reveals the metabolic regulatory functions of lncRNA in the livers of yak at different age stages

Hongsen Fu, Wei Xia, Fang Fu, Jun Yi, Wei Wang, Yong Wei, Li Wang

published 08 Oct 2025

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New insights into the molecular biology of Alzheimer’s-like cerebral amyloidosis achieved through multi‐omics approaches

Lorenzo Campanelli, Juan M. Sendoya, Scott Brody, Pablo Galeano, Sonia Do Carmo, A. Claudio Cuello, Eduardo M. Castaño, Andrés Gonzalés-Jimenez, Julia Verheul, Dina Medina-Vera, Fernando Rodríguez de Fonseca, Rasmus Wernersson, Laura Morelli

published 03 Sep 2025

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Industrial metabolism of iron and carbon with substance flow analysis in iron and steel industry

Junwen Chen, Qing Sun

published 07 Aug 2025

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Unraveling the metabolic landscape of Exophiala spinifera strain FM: Model reconstruction, insights into biodesulfurization and beyond

Hamta Babaei Naeij, Zahra Etemadifar, John Kilbane, Mohammad Hossein Karimi-Jafari, Sepideh Mofidifar

published 29 Jan 2025

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Extraction efficiency and bioactive evaluation of Tamarix nilotica and Arthrocnemum macrostachyum extracts for anti-cancer potential

Maryam Al Kaabi, Nancy A. ElNaker, Nila Jan, Michael A. Ochsenkühn, Shady A. Amin, Lina F. Yousef, Ahmed F. Yousef

published 21 Jan 2025

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Machine learning methods for predicting essential metabolic genes from Plasmodium falciparum genome-scale metabolic network

Itunuoluwa Isewon, Stephen Binaansim, Faith Adegoke, Jerry Emmanuel, Jelili Oyelade

published 23 Dec 2024

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Comparing random walks in graph embedding and link prediction

Adilson Vital Jr., Filipi Nascimento Silva, Diego Raphael Amancio

published 06 Nov 2024

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On the role of diffusion dynamics on community-aware centrality measures

Stephany Rajeh, Hocine Cherifi

published 18 Jul 2024

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