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Markov models

Empirical Models of Transitions between Coral Reef States: Effects of Region, Protection, and Environmental Change

Phillip K. Lowe, John F. Bruno, Elizabeth R. Selig, Matthew Spencer

An Alignment-Free Approach for Eukaryotic ITS2 Annotation and Phylogenetic Inference

Guillermin Agüero-Chapin, Aminael Sánchez-Rodríguez, [ ... ], Agostinho Antunes

Bioinformatic Analysis Reveals High Diversity of Bacterial Genes for Laccase-Like Enzymes

Luka Ausec, Martha Zakrzewski, [ ... ], Ines Mandic-Mulec

Identification of Plasmodium vivax Proteins with Potential Role in Invasion Using Sequence Redundancy Reduction and Profile Hidden Markov Models

Daniel Restrepo-Montoya, David Becerra, [ ... ], Manuel A. Patarroyo

A Hidden Markov Model for Analysis of Frontline Veterinary Data for Emerging Zoonotic Disease Surveillance

Colin Robertson, Kate Sawford, [ ... ], Craig Stephen

Simulation-Based Estimates of Effectiveness and Cost-Effectiveness of Smoking Cessation in Patients with Chronic Obstructive Pulmonary Disease

Kokuvi Atsou, Christos Chouaid, Gilles Hejblum

Complex Sequencing Rules of Birdsong Can be Explained by Simple Hidden Markov Processes

Kentaro Katahira, Kenta Suzuki, Kazuo Okanoya, Masato Okada

Dynamic Health Policies for Controlling the Spread of Emerging Infections: Influenza as an Example

Reza Yaesoubi, Ted Cohen

Tree-Based Position Weight Matrix Approach to Model Transcription Factor Binding Site Profiles

Yingtao Bi, Hyunsoo Kim, Ravi Gupta, Ramana V. Davuluri

Multicoil2: Predicting Coiled Coils and Their Oligomerization States from Sequence in the Twilight Zone

Jason Trigg, Karl Gutwin, Amy E. Keating, Bonnie Berger

Semi-Markov Graph Dynamics

Marco Raberto, Fabio Rapallo, Enrico Scalas

Velocity-Based Movement Modeling for Individual and Population Level Inference

Ephraim M. Hanks, Mevin B. Hooten, Devin S. Johnson, Jeremy T. Sterling

The RelA/SpoT Homolog (RSH) Superfamily: Distribution and Functional Evolution of ppGpp Synthetases and Hydrolases across the Tree of Life

Gemma C. Atkinson, Tanel Tenson, Vasili Hauryliuk

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