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Markov models

Multicoil2: Predicting Coiled Coils and Their Oligomerization States from Sequence in the Twilight Zone

Jason Trigg, Karl Gutwin, Amy E. Keating, Bonnie Berger

Semi-Markov Graph Dynamics

Marco Raberto, Fabio Rapallo, Enrico Scalas

Velocity-Based Movement Modeling for Individual and Population Level Inference

Ephraim M. Hanks, Mevin B. Hooten, Devin S. Johnson, Jeremy T. Sterling

The RelA/SpoT Homolog (RSH) Superfamily: Distribution and Functional Evolution of ppGpp Synthetases and Hydrolases across the Tree of Life

Gemma C. Atkinson, Tanel Tenson, Vasili Hauryliuk

Should I Stay or Should I Go? A Habitat-Dependent Dispersal Kernel Improves Prediction of Movement

Fabrice Vinatier, Françoise Lescourret, [ ... ], Philippe Tixier

Transmission Dynamics of Methicillin-Resistant Staphylococcus aureus in a Medical Intensive Care Unit in India

Solomon Christopher, Rejina Mariam Verghis, [ ... ], Ben Symons Cooper

On the Representability of Complete Genomes by Multiple Competing Finite-Context (Markov) Models

Armando J. Pinho, Paulo J. S. G. Ferreira, António J. R. Neves, Carlos A. C. Bastos

Beyond R₀: Demographic Models for Variability of Lifetime Reproductive Output

Hal Caswell

Explicit-Duration Hidden Markov Model Inference of UP-DOWN States from Continuous Signals

James M. McFarland, Thomas T. G. Hahn, Mayank R. Mehta

On Identifying the Optimal Number of Population Clusters via the Deviance Information Criterion

Hong Gao, Katarzyna Bryc, Carlos D. Bustamante

Continuum Molecular Simulation of Large Conformational Changes during Ion–Channel Gating

Ali Nekouzadeh, Yoram Rudy

Correlating Cell Behavior with Tissue Topology in Embryonic Epithelia

Sebastian A. Sandersius, Manli Chuai, Cornelis J. Weijer, Timothy J. Newman

Elucidation of Functional Markers from Aspergillus nidulans Developmental Regulator FlbB and Their Phylogenetic Distribution

Marc S. Cortese, Oier Etxebeste, [ ... ], Unai Ugalde

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