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Human genomics

SVvalidation: A long-read-based validation method for genomic structural variation

Yan Zheng, Xuequn Shang

published 05 Jan 2024

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Data sharing practices in collaborative human genomic research in low- and middle-income countries: A systematic review protocol

Deborah Ekusai-Sebatta, Moses Ocan, Shenuka Singh, David Kyaddondo, Dickens Akena, Loyce Nakalembe, Robert Apunyo, Alison Annet Kinengyere, Eve Namisango, Ekwaro A. Obuku, Erisa Mwaka

published 02 Nov 2023

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Are the predicted known bacterial strains in a sample really present? A case study

Minerva Ventolero, Saidi Wang, Haiyan Hu, Xiaoman Li

published 13 Oct 2023

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A novel metric to improve mismatched primer selection and quantification accuracy in amplifying DNA repeats for quantitative polymerase chain reactions

Eugenia Y. Xu, Lisa M. Schneper, Daniel A. Notterman

published 09 Oct 2023

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Assessing HLA imputation accuracy in a West African population

Ruth Nanjala, Mamana Mbiyavanga, Suhaila Hashim, Santie de Villiers, Nicola Mulder

published 28 Sep 2023

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Investigations into SARS-CoV-2 and other coronaviruses on mink farms in France late in the first year of the COVID-19 pandemic

Marine Wasniewski, Franck Boué, Céline Richomme, Etienne Simon-Lorière, Sylvie Van der Werf, Flora Donati, Vincent Enouf, Yannick Blanchard, Véronique Beven, Estelle Leperchois, Bryce Leterrier, Sandrine Corbet, Meriadeg Le Gouil, Elodie Monchatre-Leroy, Evelyne Picard-Meyer

published 25 Aug 2023

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MT-MAG: Accurate and interpretable machine learning for complete or partial taxonomic assignments of metagenome-assembled genomes

Wanxin Li, Lila Kari, Yaoliang Yu, Laura A. Hug

published 18 Aug 2023

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Transposable element insertions in 1000 Swedish individuals

Kristine Bilgrav Saether, Daniel Nilsson, Håkan Thonberg, Emma Tham, Adam Ameur, Jesper Eisfeldt, Anna Lindstrand

published 28 Jul 2023

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New oncogenic functions of LINE1 retroelement as a ceRNA for tumor suppressive microRNA miR-126 on ENPP5

Kang-Hoon Lee, Hyeon-Ji Hwang, Yeo-Jin Im, A-Reum Nam, Jeong-Woon Lee, Je-Yoel Cho

published 23 Jun 2023

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Ancient segmentally duplicated LCORL retrocopies in equids

Kevin Batcher, Scarlett Varney, Terje Raudsepp, Matthew Jevit, Peter Dickinson, Vidhya Jagannathan, Tosso Leeb, Danika Bannasch

published 08 Jun 2023

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Interrogating 1000 insect genomes for NUMTs: A risk assessment for estimates of species richness

Paul D. N. Hebert, Dan G. Bock, Sean W. J. Prosser

published 08 Jun 2023

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Lost in HELLS: Disentangling the mystery of SALNR existence in senescence cellular models

Arianna Consiglio, Marco Venturin, Sabrina Briguglio, Clara Rossi, Giorgio Grillo, Stefano Bellosta, Maria Grazia Cattaneo, Flavio Licciulli, Cristina Battaglia

published 30 May 2023

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Mirage2’s high-quality spliced protein-to-genome mappings produce accurate multiple-sequence alignments of isoforms

Alexander J. Nord, Travis J. Wheeler

published 08 May 2023

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