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Human genomics

Nearby and non-nested genes in the human genome have more similar genotype tissue expression

Jiahong Dong, Stephen Brown, Kevin Truong

published 18 Sep 2024

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Puzzle Hi-C: An accurate scaffolding software

Guoliang Lin, Zhiru Huang, Tingsong Yue, Jing Chai, Yan Li, Huimin Yang, Wanting Qin, Guobing Yang, Robert W. Murphy, Ya-ping Zhang, Zijie Zhang, Wei Zhou, Jing Luo

published 15 Jul 2024

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Acute strength exercise training impacts differently the HERV-W expression and inflammatory biomarkers in resistance exercise training individuals

Lucas Vinicius Morais, Samuel Nascimento dos Santos, Tabatah Hellen Gomes, Camila Malta Romano, Patricia Colombo-Souza, Jonatas Bussador Amaral, Marina Tiemi Shio, Lucas Melo Neves, André Luis Lacerda Bachi, Carolina Nunes França, Luiz Henrique da Silva Nali

published 16 May 2024

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Relationships between genomic dissipation and de novo SNP evolution

Zackery E. Plyler, Christopher W. McAtee, Aubrey E. Hill, Michael R. Crowley, Janice M. Tindall, Samuel R. Tindall, Disha Joshi, Eric J. Sorscher

published 16 May 2024

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Leveraging genomic signatures of oral microbiome-associated antibiotic resistance genes for diagnosing pancreatic cancer

Xiaojing Shen, Xiaolin Zhu, Hairong Liu, Rongtao Yuan, Qingyuan Guo, Peng Zhao

published 30 Apr 2024

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A hepatitis B virus (HBV) sequence variation graph improves alignment and sample-specific consensus sequence construction

Dylan Duchen, Steven J. Clipman, Candelaria Vergara, Chloe L. Thio, David L. Thomas, Priya Duggal, Genevieve L. Wojcik

published 26 Apr 2024

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A comparison of software for analysis of rare and common short tandem repeat (STR) variation using human genome sequences from clinical and population-based samples

John W. Oketch, Louise V. Wain, Edward J. Hollox

published 01 Apr 2024

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CRISPR-Cas9-guided amplification-free genomic diagnosis for familial hypercholesterolemia using nanopore sequencing

Sijia Xu, Hiroki Shiomi, Yugo Yamashita, Satoshi Koyama, Takahiro Horie, Osamu Baba, Masahiro Kimura, Yasuhiro Nakashima, Naoya Sowa, Koji Hasegawa, Ayako Suzuki, Yutaka Suzuki, Takeshi Kimura, Koh Ono

published 20 Mar 2024

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HaplotagLR: An efficient and configurable utility for haplotagging long reads

Monica J. Holmes, Babak Mahjour, Christopher P. Castro, Gregory A. Farnum, Adam G. Diehl, Alan P. Boyle

published 13 Mar 2024

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Preclinical toxicity analyses of lentiviral vectors expressing the HIV-1 LTR-specific designer-recombinase Brec1

Niklas Beschorner, Paul Künzle, Maike Voges, Ilona Hauber, Daniela Indenbirken, Jacqueline Nakel, Sanamjeet Virdi, Peter Bradtke, Niels Christian Lory, Michael Rothe, Maciej Paszkowski-Rogacz, Frank Buchholz, Adam Grundhoff, Axel Schambach, Christian Thirion, Hans-Willi Mittrücker, Julian Schulze zur Wiesch, Joachim Hauber, Jan Chemnitz

published 08 Mar 2024

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Expanding the DNA editing toolbox: Novel lambda integrase variants targeting microalgal and human genome sequences

Jia Wei Siau, Asim Azhar Siddiqui, Sze Yi Lau, Srinivasaraghavan Kannan, Sabrina Peter, Yingying Zeng, Chandra Verma, Peter Droge, John F. Ghadessy

published 13 Feb 2024

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Metagenomic analyses of 7000 to 5500 years old coprolites excavated from the Torihama shell-mound site in the Japanese archipelago

Luca Nishimura, Akio Tanino, Mayumi Ajimoto, Takafumi Katsumura, Motoyuki Ogawa, Kae Koganebuchi, Daisuke Waku, Masahiko Kumagai, Ryota Sugimoto, Hirofumi Nakaoka, Hiroki Oota, Ituro Inoue

published 24 Jan 2024

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SVvalidation: A long-read-based validation method for genomic structural variation

Yan Zheng, Xuequn Shang

published 05 Jan 2024

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