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Human genomics

Short tandem repeat variants are possibly associated with RNA secondary structure and gene expression

Nick Kinney, Dikshya Pathak, Emma Evans, Paola Arias

published 18 Jun 2025

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Host-pathogen protein interaction studies: quality control of cDNA libraries using nanopore sequencing

Cécile Schimmich, Mathilde Gondard, Gregory Caignard, José-Carlos Valle-Casuso, Damien Vitour, François Piumi

published 30 May 2025

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Utilizing a deep learning model based on BERT for identifying enhancers and their strength

Tong Wang, Mengqi Gao

published 09 Apr 2025

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An updated compendium and reevaluation of the evidence for nuclear transcription factor occupancy over the mitochondrial genome

Georgi K Marinov, Vivekanandan Ramalingam, William J Greenleaf, Anshul Kundaje

published 31 Mar 2025

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Detection of hepatitis B virus mRNA from single cell RNA sequencing data without prior knowledge

Nicolaas Van Renne, Thomas Vanwolleghem

published 11 Feb 2025

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Comparisons of performances of structural variants detection algorithms in solitary or combination strategy

De-Min Duan, Chinyi Cheng, Yu-Shu Huang, An-ko Chung, Pin-Xuan Chen, Yu-An Chen, Jacob Shujui Hsu, Pei-Lung Chen

published 06 Feb 2025

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A genomics learning framework for undergraduates

Laura K. Reed, Adam J. Kleinschmit, Vincent Buonaccorsi, Arthur G. Hunt, Douglas Chalker, Jason Williams, Christopher J. Jones, Juan-Carlos Martinez-Cruzado, Anne Rosenwald

published 09 Jan 2025

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Hypermethylation at 45S rDNA promoter in cancers

Trang Thi Quynh Tran, Trang Hien Do, Tung The Pham, Phương Thi Thu Luu, Oanh Minh Pham, Uyen Quynh Nguyen, Linh Dieu Vuong, Quang Ngoc Nguyen, Tuan Van Mai, Son Van Ho, Than Thi Nguyen, Lan Thi Thuong Vo

published 07 Jan 2025

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An appropriate DNA input for bisulfite conversion reveals LINE-1 and Alu hypermethylation in tissues and circulating cell-free DNA from cancers

Trang Thi Quynh Tran, Tung The Pham, Than Thi Nguyen, Trang Hien Do, Phuong Thi Thu Luu, Uyen Quynh Nguyen, Linh Dieu Vuong, Quang Ngoc Nguyen, Son Van Ho, Hang Viet Dao, Tong Van Hoang, Lan Thi Thuong Vo

published 30 Dec 2024

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Comparative analysis of whole exome sequencing kits for the canine genome

Jinhee Jang, Yong-Jik Lee, Soohyun Ko, A. M. Abd El-Aty, Ibrahim Gecili, Ji Hoon Jeong, ChangHyuk Kwon, Tae Woo Jung

published 04 Nov 2024

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Nearby and non-nested genes in the human genome have more similar genotype tissue expression

Jiahong Dong, Stephen Brown, Kevin Truong

published 18 Sep 2024

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Puzzle Hi-C: An accurate scaffolding software

Guoliang Lin, Zhiru Huang, Tingsong Yue, Jing Chai, Yan Li, Huimin Yang, Wanting Qin, Guobing Yang, Robert W. Murphy, Ya-ping Zhang, Zijie Zhang, Wei Zhou, Jing Luo

published 15 Jul 2024

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Acute strength exercise training impacts differently the HERV-W expression and inflammatory biomarkers in resistance exercise training individuals

Lucas Vinicius Morais, Samuel Nascimento dos Santos, Tabatah Hellen Gomes, Camila Malta Romano, Patricia Colombo-Souza, Jonatas Bussador Amaral, Marina Tiemi Shio, Lucas Melo Neves, André Luis Lacerda Bachi, Carolina Nunes França, Luiz Henrique da Silva Nali

published 16 May 2024

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