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High throughput sequencing

A hepatitis B virus (HBV) sequence variation graph improves alignment and sample-specific consensus sequence construction

Dylan Duchen, Steven J. Clipman, Candelaria Vergara, Chloe L. Thio, David L. Thomas, Priya Duggal, Genevieve L. Wojcik

published 26 Apr 2024

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High-throughput DNA extraction and cost-effective miniaturized metagenome and amplicon library preparation of soil samples for DNA sequencing

Thomas Bygh Nymann Jensen, Sebastian Mølvang Dall, Simon Knutsson, Søren Michael Karst, Mads Albertsen

published 04 Apr 2024

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A quantitative assay for the assessment of cutaneous human papillomaviruses and polyomaviruses over time: A proof-of-concept in two patients with atopic dermatitis and psoriasis

Aurélie Du-Thanh, Vincent Foulongne, Olivier Dereure, Marc Eloit, Philippe Pérot

published 03 Apr 2024

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Haplotype-level metabarcoding of freshwater macroinvertebrate species: A prospective tool for population genetic analysis

Joeselle M. Serrana, Kozo Watanabe

published 24 Jul 2023

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Optimised protocol for monitoring SARS-CoV-2 in wastewater using reverse complement PCR-based whole-genome sequencing

Harry T. Child, Paul A. O’Neill, Karen Moore, William Rowe, Hubert Denise, David Bass, Matthew J. Wade, Matt Loose, Steve Paterson, Ronny van Aerle, Aaron R. Jeffries

published 14 Apr 2023

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Cost-conscious generation of multiplexed short-read DNA libraries for whole-genome sequencing

Ashley Jones, David Stanley, Scott Ferguson, Benjamin Schwessinger, Justin Borevitz, Norman Warthmann

published 27 Jan 2023

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Use of universal primers for the 18S ribosomal RNA gene and whole soil DNAs to reveal the taxonomic structures of soil nematodes by high-throughput amplicon sequencing

Harutaro Kenmotsu, Emi Takabayashi, Akinori Takase, Yuu Hirose, Toshihiko Eki

published 15 Nov 2021

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Distinct community structures of soil nematodes from three ecologically different sites revealed by high-throughput amplicon sequencing of four 18S ribosomal RNA gene regions

Harutaro Kenmotsu, Masahiro Ishikawa, Tomokazu Nitta, Yuu Hirose, Toshihiko Eki

published 15 Apr 2021

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Characterization of cerebrospinal fluid (CSF) microbiota from patients with CSF shunt infection and reinfection using high throughput sequencing of 16S ribosomal RNAgenes

Kathryn B. Whitlock, Christopher E. Pope, Paul Hodor, Lucas R. Hoffman, David L. Limbrick Jr., Patrick J. McDonald, Jason S. Hauptman, Jeffrey G. Ojemann, Tamara D. Simon, on behalf of the Cerebrospinal FLuId MicroBiota in Shunts Study (CLIMB) Group

published 06 Jan 2021

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Generation of ssDNA aptamers as diagnostic tool for Newcastle avian virus

Boutheina Marnissi, Masood Kamali-Moghaddam, Abdeljelil Ghram, Issam Hmila

published 13 Aug 2020

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Exon sequencing mutation detection algorithm based on PCR matching

Guobin Chen, Xianzhong Xie

published 13 Aug 2020

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Molecular sequencing and morphological identification reveal similar patterns in native bee communities across public and private grasslands of eastern North Dakota

Brian Darby, Russ Bryant, Abby Keller, Madison Jochim, Josephine Moe, Zoe Schreiner, Carrie Pratt, Ned H. Euliss Jr., Mia Park, Rebecca Simmons, Clint Otto

published 23 Jan 2020

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Development of a high throughput human stool specimen processing method for a molecular Helicobacter pylori clarithromycin resistance assay

Natalie Clines, Erin Beckman

published 16 Dec 2019

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