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Heuristic alignment procedure

SSW Library: An SIMD Smith-Waterman C/C++ Library for Use in Genomic Applications

Mengyao Zhao, Wan-Ping Lee, Erik P. Garrison, Gabor T. Marth

Increasing Sequence Search Sensitivity with Transitive Alignments

Ketil Malde, Tomasz Furmanek

Fungi in Thailand: A Case Study of the Efficacy of an ITS Barcode for Automatically Identifying Species within the Annulohypoxylon and Hypoxylon Genera

Nuttika Suwannasai, María P. Martín, [ ... ], John L. Spouge

HeurAA: Accurate and Fast Detection of Genetic Variations with a Novel Heuristic Amplicon Aligner Program for Next Generation Sequencing

Lőrinc S. Pongor, Ferenc Pintér, István Peták

SAS-Pro: Simultaneous Residue Assignment and Structure Superposition for Protein Structure Alignment

Shweta B. Shah, Nikolaos V. Sahinidis

Treelength Optimization for Phylogeny Estimation

Kevin Liu, Tandy Warnow

FastBLAST: Homology Relationships for Millions of Proteins

Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin

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