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Heuristic alignment procedure

SSW Library: An SIMD Smith-Waterman C/C++ Library for Use in Genomic Applications

Mengyao Zhao, Wan-Ping Lee, Erik P. Garrison, Gabor T. Marth

HIVE-Hexagon: High-Performance, Parallelized Sequence Alignment for Next-Generation Sequencing Data Analysis

Luis Santana-Quintero, Hayley Dingerdissen, [ ... ], Vahan Simonyan

FastBLAST: Homology Relationships for Millions of Proteins

Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin

CUSHAW3: Sensitive and Accurate Base-Space and Color-Space Short-Read Alignment with Hybrid Seeding

Yongchao Liu, Bernt Popp, Bertil Schmidt

Fungi in Thailand: A Case Study of the Efficacy of an ITS Barcode for Automatically Identifying Species within the Annulohypoxylon and Hypoxylon Genera

Nuttika Suwannasai, María P. Martín, [ ... ], John L. Spouge

Ontology Alignment Repair through Modularization and Confidence-Based Heuristics

Emanuel Santos, Daniel Faria, Catia Pesquita, Francisco M. Couto

MC64-ClustalWP2: A Highly-Parallel Hybrid Strategy to Align Multiple Sequences in Many-Core Architectures

David Díaz, Francisco J. Esteban, [ ... ], Sergio Gálvez

Treelength Optimization for Phylogeny Estimation

Kevin Liu, Tandy Warnow

SAS-Pro: Simultaneous Residue Assignment and Structure Superposition for Protein Structure Alignment

Shweta B. Shah, Nikolaos V. Sahinidis

HeurAA: Accurate and Fast Detection of Genetic Variations with a Novel Heuristic Amplicon Aligner Program for Next Generation Sequencing

Lőrinc S. Pongor, Ferenc Pintér, István Peták

CAB-Align: A Flexible Protein Structure Alignment Method Based on the Residue-Residue Contact Area

Genki Terashi, Mayuko Takeda-Shitaka

Two Simple and Efficient Algorithms to Compute the SP-Score Objective Function of a Multiple Sequence Alignment

Vincent Ranwez

Parallel and Scalable Short-Read Alignment on Multi-Core Clusters Using UPC++

Jorge González-Domínguez, Yongchao Liu, Bertil Schmidt

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