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Genotyping

Nanopore sequencing data analysis using Microsoft Azure cloud computing service

Linh Truong, Felipe Ayora, Lloyd D’Orsogna, Patricia Martinez, Dianne De Santis

published 02 Dec 2022

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Human papillomavirus genotyping using next generation sequencing (NGS) in cervical lesions: Genotypes by histologic grade and their relative proportion in multiple infections

Jorge Alejandro Basiletti, Joan Valls, Tomás Poklépovich, María Dolores Fellner, Maryluz Rol, Rafael Alonso, Rita Mariel Correa, María Celeste Colucci, Mercedes Rodríguez de la Peña, Paula Gabriela Falabella, Agustina Saíno, Josefina Campos, Rolando Herrero, Maribel Almonte, María Alejandra Picconi

published 23 Nov 2022

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Novel genotyping algorithms for rare variants significantly improve the accuracy of Applied Biosystems™ Axiom™ array genotyping calls: Retrospective evaluation of UK Biobank array data

Orna Mizrahi-Man, Marcos H. Woehrmann, Teresa A. Webster, Jeremy Gollub, Adrian Bivol, Sara M. Keeble, Katherine H. Aull, Anuradha Mittal, Alan H. Roter, Brant A. Wong, Jeanette P. Schmidt

published 17 Nov 2022

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Evaluating noninvasive methods for estimating cestode prevalence in a wild carnivore population

Ellen E. Brandell, Madeline K. Jackson, Paul C. Cross, Antoinette J. Piaggio, Daniel R. Taylor, Douglas W. Smith, Belgees Boufana, Daniel R. Stahler, Peter J. Hudson

published 15 Nov 2022

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Probabilistic mathematical modelling to predict the red cell phenotyped donor panel size

Denisse Best, Kevin Burrage, Pamela Burrage, Diane Donovan, Shamila Ginige, Tanya Powley, Bevan Thompson, James Daly

published 11 Nov 2022

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Genetic associations with resistance to Meloidogyne enterolobii in guava (Psidium sp.) using cross-genera SNPs and comparative genomics to Eucalyptus highlight evolutionary conservation across the Myrtaceae

Carlos Antonio Fernandes Santos, Soniane Rodrigues da Costa, Leonardo Silva Boiteux, Dario Grattapaglia, Orzenil Bonfim Silva-Junior

published 02 Nov 2022

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Rate of virological failure and HIV-1 drug resistance among HIV-infected adolescents in routine follow-up on health facilities in Cameroon

Calixte Ida Penda, Magaly Moukoko Mbonjo, Joseph Fokam, Armando Blondel Djiyou Djeuda, Ngondi Grace, Francis Ateba Ndongo, Serge Bilong, Bertrand Eyoum Bille, Paul Koki Ndombo, Avelin Aghokeng, Alexis Ndjolo, Carole Else Eboumbou Moukoko

published 26 Oct 2022

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Genome-wide SNP genotyping as a simple and practical tool to accelerate the development of inbred lines in outbred tree species: An example in cacao (Theobroma cacao L.)

Uilson Vanderlei Lopes, José Luis Pires, Karina Peres Gramacho, Dario Grattapaglia

published 26 Oct 2022

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A comparative analysis of current phasing and imputation software

Adriano De Marino, Abdallah Amr Mahmoud, Madhuchanda Bose, Karatuğ Ozan Bircan, Andrew Terpolovsky, Varuna Bamunusinghe, Sandra Bohn, Umar Khan, Biljana Novković, Puya G. Yazdi

published 19 Oct 2022

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Species-informative SNP markers for characterising freshwater prawns of genus Macrobrachium in Cameroon

Judith G. Makombu, Evans K. Cheruiyot, Francesca Stomeo, David N. Thuo, Pius M. Oben, Benedicta O. Oben, Paul Zango, Eric Mialhe, Jules R. Ngueguim, Fidalis D. N. Mujibi

published 03 Oct 2022

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Full genotyping and FAM19A4/miR124-2 methylation analysis in high-risk human papillomavirus–positive samples from women over 30 years participating in cervical cancer screening in Örebro, Sweden

Malin Kaliff, Gabriella Lillsunde Larsson, Gisela Helenius, Mats G. Karlsson, Lovisa Bergengren

published 22 Sep 2022

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Rapid genotyping of targeted viral samples using Illumina short-read sequencing data

Alex Váradi, Eszter Kaszab, Gábor Kardos, Eszter Prépost, Krisztina Szarka, Levente Laczkó

published 16 Sep 2022

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The prevalence of the ABCB1-1Δ variant in a clinical veterinary setting: The risk of not genotyping

Evy Beckers, Iris Casselman, Emma Soudant, Sylvie Daminet, Dominique Paepe, Luc Peelman, Bart J. G. Broeckx

published 29 Aug 2022

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