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Genomic signal processing

Identification of epilepsy related pathways using genome-wide DNA methylation measures: A trio-based approach

Ozkan Ozdemir, Ece Egemen, Sibel Aylin Ugur Iseri, Osman Ugur Sezerman, Nerses Bebek, Betul Baykan, Ugur Ozbek

published 08 Feb 2019

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A genome-wide scan for diversifying selection signatures in selected horse breeds

Artur Gurgul, Igor Jasielczuk, Ewelina Semik-Gurgul, Klaudia Pawlina-Tyszko, Monika Stefaniuk-Szmukier, Tomasz Szmatoła, Grażyna Polak, Iwona Tomczyk-Wrona, Monika Bugno-Poniewierska

published 30 Jan 2019

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Viral loads correlate with upregulation of PD-L1 and worse patient prognosis in Epstein–Barr Virus-associated gastric carcinoma

Atsuhito Nakayama, Hiroyuki Abe, Akiko Kunita, Ruri Saito, Teru Kanda, Hiroharu Yamashita, Yasuyuki Seto, Shumpei Ishikawa, Masashi Fukayama

published 29 Jan 2019

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Molecular machinery of auxin synthesis, secretion, and perception in the unicellular chlorophyte alga Chlorella sorokiniana UTEX 1230

Maya Khasin, Rebecca R. Cahoon, Kenneth W. Nickerson, Wayne R. Riekhof

published 10 Dec 2018

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An improved DNA array-based classification method for the identification of Salmonella serotypes shows high concordance between traditional and genotypic testing

James Robertson, Catherine Yoshida, Simone Gurnik, Madison McGrogan, Kristin Davis, Gitanjali Arya, Stephanie A. Murphy, Anil Nichani, John H. E. Nash

published 04 Dec 2018

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Clustering-local-unique-enriched-signals (CLUES) promotes identification of novel regulators of ES cell self-renewal and pluripotency

Chao Wu, Yang Jiao, Manli Shen, Chen Pan, Guo Cheng, Danmei Jia, Jing Zhu, Long Zhang, Min Zheng, Junling Jia

published 06 Nov 2018

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Sequence characteristics define trade-offs between on-target and genome-wide off-target hybridization of oligoprobes

Olga V. Matveeva, Aleksey Y. Ogurtsov, Nafisa N. Nazipova, Svetlana A. Shabalina

published 21 Jun 2018

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Identifying artificial selection signals in the chicken genome

Yunlong Ma, Lantao Gu, Liubin Yang, Chenghao Sun, Shengsong Xie, Chengchi Fang, Yangzhang Gong, Shijun Li

published 26 Apr 2018

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A new method for detecting signal regions in ordered sequences of real numbers, and application to viral genomic data

Julia R. Gog, Andrew M. L. Lever, Jordan P. Skittrall

published 13 Apr 2018

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Genomic regions associated with susceptibility to Barrett’s esophagus and esophageal adenocarcinoma in African Americans: The cross BETRNet admixture study

Xiangqing Sun, Apoorva K. Chandar, Marcia I. Canto, Prashanthi N. Thota, Malcom Brock, Nicholas J. Shaheen, David G. Beer, Jean S. Wang, Gary W. Falk, Prasad G. Iyer, Julian A. Abrams, Medha Venkat-Ramani, Martina Veigl, Alexander Miron, Joseph Willis, Deepa T. Patil, Ilke Nalbantoglu, Kishore Guda, Sanford D. Markowitz, Xiaofeng Zhu, Robert Elston, Amitabh Chak

published 26 Oct 2017

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Amplification of the EGFR gene can be maintained and modulated by variation of EGF concentrations in in vitro models of glioblastoma multiforme

Doreen William, Poroshista Mokri, Nora Lamp, Michael Linnebacher, Carl Friedrich Classen, Andreas Erbersdobler, Björn Schneider

published 21 Sep 2017

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RNA sequencing to determine the contribution of kinase receptor transactivation to G protein coupled receptor signalling in vascular smooth muscle cells

Danielle Kamato, Venkata Vijayanand Bhaskarala, Nitin Mantri, Tae Gyu Oh, Dora Ling, Reearna Janke, Wenhua Zheng, Peter J Little, Narin Osman

published 18 Jul 2017

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Exploiting repetitive sequences and BAC clones in Festuca pratensis karyotyping

Joanna Majka, Tomasz Książczyk, Agnieszka Kiełbowicz-Matuk, David Kopecký, Arkadiusz Kosmala

published 07 Jun 2017

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