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Genomic signal processing

Analysis of Antisense Expression by Whole Genome Tiling Microarrays and siRNAs Suggests Mis-Annotation of Arabidopsis Orphan Protein-Coding Genes

Casey R. Richardson, Qing-Jun Luo, Viktoria Gontcharova, Ying-Wen Jiang, Manoj Samanta, Eunseog Youn, Christopher D. Rock

published 26 May 2010

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Extranuclear Estrogen Receptors Mediate the Neuroprotective Effects of Estrogen in the Rat Hippocampus

Li-cai Yang, Quan-Guang Zhang, Cai-feng Zhou, Fang Yang, Yi-dong Zhang, Rui-min Wang, Darrell W. Brann

published 07 May 2010

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TiArA: A Virtual Appliance for the Analysis of Tiling Array Data

Jason A. Greenbaum, Erika Assarsson, Jo L. Chung, Steven Head, Alessandro Sette, Bjoern Peters

published 01 Apr 2010

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Genetic Variation and Recent Positive Selection in Worldwide Human Populations: Evidence from Nearly 1 Million SNPs

David López Herráez, Marc Bauchet, Kun Tang, Christoph Theunert, Irina Pugach, Jing Li, Madhusudan R. Nandineni, Arnd Gross, Markus Scholz, Mark Stoneking

published 18 Nov 2009

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Genome-Scale Identification Method Applied to Find Cryptic Aminoglycoside Resistance Genes in Pseudomonas aeruginosa

Julie M. Struble, Ryan T. Gill

published 11 Nov 2009

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Reverse Engineering a Signaling Network Using Alternative Inputs

Hiromasa Tanaka, Tau-Mu Yi

published 29 Oct 2009

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Custom Design and Analysis of High-Density Oligonucleotide Bacterial Tiling Microarrays

Gard O. S. Thomassen, Alexander D. Rowe, Karin Lagesen, Jessica M. Lindvall, Torbjørn Rognes

published 17 Jun 2009

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Prediction of Type III Secretion Signals in Genomes of Gram-Negative Bacteria

Martin Löwer, Gisbert Schneider

published 15 Jun 2009

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Analysis of Functional Genomic Signals Using the XOR Gate

Mahesh Yaragatti, Qi Wen

published 19 May 2009

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Locked Nucleic Acid Pentamers as Universal PCR Primers for Genomic DNA Amplification

Zhen Sun, Zhi Chen, Xiaoli Hou, Shuping Li, Haihong Zhu, Ji Qian, Daru Lu, Wei Liu

published 11 Nov 2008

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Sequence Information Encoded in DNA that May Influence Long-Range Chromatin Structure Correlates with Human Chromosome Functions

Taichi E. Takasuka, Alfred Cioffi, Arnold Stein

published 09 Jul 2008

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Integrative Genome-Wide Expression Analysis Bears Evidence of Estrogen Receptor-Independent Transcription in Heregulin-Stimulated MCF-7 Cells

Takeshi Nagashima, Takahiro Suzuki, Shinji Kondo, Yoko Kuroki, Kaoru Takahashi, Kaori Ide, Noriko Yumoto, Aki Hasegawa, Tetsuro Toyoda, Toshio Kojima, Akihiko Konagaya, Harukazu Suzuki, Yoshihide Hayashizaki, Yoshiyuki Sakaki, Mariko Hatakeyama

published 19 Mar 2008

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An Intronic Signal for Alternative Splicing in the Human Genome

Necat Havlioglu, Jun Wang, Kazuo Fushimi, Maria D. Vibranovski, Zhengyan Kan, Warren Gish, Alexei Fedorov, Manyuan Long, Jane Y. Wu

published 28 Nov 2007

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