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Genomic signal processing

TiArA: A Virtual Appliance for the Analysis of Tiling Array Data

Jason A. Greenbaum, Erika Assarsson, [ ... ], Bjoern Peters

Genetic Variation and Recent Positive Selection in Worldwide Human Populations: Evidence from Nearly 1 Million SNPs

David López Herráez, Marc Bauchet, [ ... ], Mark Stoneking

Genome-Scale Identification Method Applied to Find Cryptic Aminoglycoside Resistance Genes in Pseudomonas aeruginosa

Julie M. Struble, Ryan T. Gill

Reverse Engineering a Signaling Network Using Alternative Inputs

Hiromasa Tanaka, Tau-Mu Yi

Custom Design and Analysis of High-Density Oligonucleotide Bacterial Tiling Microarrays

Gard O. S. Thomassen, Alexander D. Rowe, [ ... ], Torbjørn Rognes

Prediction of Type III Secretion Signals in Genomes of Gram-Negative Bacteria

Martin Löwer, Gisbert Schneider

Analysis of Functional Genomic Signals Using the XOR Gate

Mahesh Yaragatti, Qi Wen

Locked Nucleic Acid Pentamers as Universal PCR Primers for Genomic DNA Amplification

Zhen Sun, Zhi Chen, [ ... ], Wei Liu

Sequence Information Encoded in DNA that May Influence Long-Range Chromatin Structure Correlates with Human Chromosome Functions

Taichi E. Takasuka, Alfred Cioffi, Arnold Stein

Integrative Genome-Wide Expression Analysis Bears Evidence of Estrogen Receptor-Independent Transcription in Heregulin-Stimulated MCF-7 Cells

Takeshi Nagashima, Takahiro Suzuki, [ ... ], Mariko Hatakeyama

An Intronic Signal for Alternative Splicing in the Human Genome

Necat Havlioglu, Jun Wang, [ ... ], Jane Y. Wu

Identification of Upper Respiratory Tract Pathogens Using Electrochemical Detection on an Oligonucleotide Microarray

Michael J. Lodes, Dominic Suciu, [ ... ], Andrew McShea

Genome-Wide Analysis of Nucleotide-Level Variation in Commonly Used Saccharomyces cerevisiae Strains

Joseph Schacherer, Douglas M. Ruderfer, [ ... ], Leonid Kruglyak

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