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Genome sequencing

Genetic profiling of Mycobacterium tuberculosis revealed “modern” Beijing strains linked to MDR-TB from Southwestern Colombia

Luisa Maria Nieto Ramirez, Beatriz E. Ferro, Gustavo Diaz, Richard M. Anthony, Jessica de Beer, Dick van Soolingen

published 24 Apr 2020

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Advancing clinical cohort selection with genomics analysis on a distributed platform

Jaclyn M. Smith, Melvin Lathara, Hollis Wright, Brian Hill, Nalini Ganapati, Ganapati Srinivasa, Christopher T. Denny

published 23 Apr 2020

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Nosocomial transmission of extensively drug resistant Acinetobacter baumannii strains in a tertiary level hospital

Paúl Alexis López-Durán, Salvador Fonseca-Coronado, Lucila Maritza Lozano-Trenado, Sergio Araujo-Betanzos, Deniria Alejandra Rugerio-Trujillo, Gilberto Vaughan, Elsa Saldaña-Rivera

published 17 Apr 2020

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Whole genome sequencing of extended-spectrum β-lactamase genes in Enterobacteriaceae isolates from Nigeria

Christiana Jesumirhewe, Burkhard Springer, Franz Allerberger, Werner Ruppitsch

published 14 Apr 2020

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Whole genome sequencing characterization of Slovenian carbapenem-resistant Klebsiella pneumoniae, including OXA-48 and NDM-1 producing outbreak isolates

Katarina Benulič, Mateja Pirš, Natacha Couto, Monika Chlebowicz, John W. A. Rossen, Tomaž Mark Zorec, Katja Seme, Mario Poljak, Tatjana Lejko Zupanc, Eva Ružić-Sabljić, Tjaša Cerar

published 13 Apr 2020

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Can we use it? On the utility of de novo and reference-based assembly of Nanopore data for plant plastome sequencing

Agnes Scheunert, Marco Dorfner, Thomas Lingl, Christoph Oberprieler

published 24 Mar 2020

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Comparative analysis of novel MGISEQ-2000 sequencing platform vs Illumina HiSeq 2500 for whole-genome sequencing

Dmitriy Korostin, Nikolay Kulemin, Vladimir Naumov, Vera Belova, Dmitriy Kwon, Alexey Gorbachev

published 16 Mar 2020

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Induction of competent cells for Agrobacterium tumefaciens-mediated stable transformation of common bean (Phaseolus vulgaris L.)

Guo-qing Song, Xue Han, Andrew T. Wiersma, Xiaojuan Zong, Halima E. Awale, James D. Kelly

published 05 Mar 2020

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Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data

Kyle D. Brumfield, Anwar Huq, Rita R. Colwell, James L. Olds, Menu B. Leddy

published 13 Feb 2020

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How “simple” methodological decisions affect interpretation of population structure based on reduced representation library DNA sequencing: A case study using the lake whitefish

Carly F. Graham, Douglas R. Boreham, Richard G. Manzon, Wendylee Stott, Joanna Y. Wilson, Christopher M. Somers

published 24 Jan 2020

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Clinical, cytogenetic and molecular genetic characterization of a tandem fusion translocation in a male Holstein cattle with congenital hypospadias and a ventricular septal defect

Alessandra Iannuzzi, Marina Braun, Viviana Genualdo, Angela Perucatti, Sina Reinartz, Ioannis Proios, Maike Heppelmann, Jürgen Rehage, Kirsten Hülskötter, Andreas Beineke, Julia Metzger, Ottmar Distl

published 10 Jan 2020

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Investigating unexplained genetic variation and its expression in the arbuscular mycorrhizal fungus Rhizophagus irregularis: A comparison of whole genome and RAD sequencing data

Frédéric G. Masclaux, Tania Wyss, Marco Pagni, Pawel Rosikiewicz, Ian R. Sanders

published 27 Dec 2019

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Backward compatibility of whole genome sequencing data with MLVA typing using a new MLVAtype shiny application for Vibrio cholerae

Jérôme Ambroise, Léonid M. Irenge, Jean-François Durant, Bertrand Bearzatto, Godfrey Bwire, O. Colin Stine, Jean-Luc Gala

published 11 Dec 2019

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