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Genome sequencing

Disentangling primer interactions improves SARS-CoV-2 genome sequencing by multiplex tiling PCR

Kentaro Itokawa, Tsuyoshi Sekizuka, Masanori Hashino, Rina Tanaka, Makoto Kuroda

published 18 Sep 2020

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Shiny-SoSV: A web-based performance calculator for somatic structural variant detection

Tingting Gong, Vanessa M. Hayes, Eva K. F. Chan

published 27 Aug 2020

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Non-invasive prenatal testing (NIPT) by low coverage genomic sequencing: Detection limits of screened chromosomal microdeletions

Marcel Kucharik, Andrej Gnip, Michaela Hyblova, Jaroslav Budis, Lucia Strieskova, Maria Harsanyova, Ondrej Pös, Zuzana Kubiritova, Jan Radvanszky, Gabriel Minarik, Tomas Szemes

published 26 Aug 2020

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ShAn: An easy-to-use tool for interactive and integrated variant annotation

Venkat Subramaniam Rathinakannan, Hannu-Pekka Schukov, Samuel Heron, Johanna Schleutker, Csilla Sipeky

published 07 Jul 2020

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Genomic analyses of multidrug-resistant Salmonella Indiana, Typhimurium, and Enteritidis isolates using MinION and MiSeq sequencing technologies

Zhao Chen, Dai Kuang, Xuebin Xu, Narjol González-Escalona, David L. Erickson, Eric Brown, Jianghong Meng

published 02 Jul 2020

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Isolation of a novel species in the genus Cupriavidus from a patient with sepsis using whole genome sequencing

Oh Joo Kweon, Yong Kwan Lim, Hye Ryoun Kim, Tae-Hyoung Kim, Sung-min Ha, Mi-Kyung Lee

published 13 May 2020

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Genetic profiling of Mycobacterium tuberculosis revealed “modern” Beijing strains linked to MDR-TB from Southwestern Colombia

Luisa Maria Nieto Ramirez, Beatriz E. Ferro, Gustavo Diaz, Richard M. Anthony, Jessica de Beer, Dick van Soolingen

published 24 Apr 2020

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Advancing clinical cohort selection with genomics analysis on a distributed platform

Jaclyn M. Smith, Melvin Lathara, Hollis Wright, Brian Hill, Nalini Ganapati, Ganapati Srinivasa, Christopher T. Denny

published 23 Apr 2020

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Nosocomial transmission of extensively drug resistant Acinetobacter baumannii strains in a tertiary level hospital

Paúl Alexis López-Durán, Salvador Fonseca-Coronado, Lucila Maritza Lozano-Trenado, Sergio Araujo-Betanzos, Deniria Alejandra Rugerio-Trujillo, Gilberto Vaughan, Elsa Saldaña-Rivera

published 17 Apr 2020

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Whole genome sequencing of extended-spectrum β-lactamase genes in Enterobacteriaceae isolates from Nigeria

Christiana Jesumirhewe, Burkhard Springer, Franz Allerberger, Werner Ruppitsch

published 14 Apr 2020

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Whole genome sequencing characterization of Slovenian carbapenem-resistant Klebsiella pneumoniae, including OXA-48 and NDM-1 producing outbreak isolates

Katarina Benulič, Mateja Pirš, Natacha Couto, Monika Chlebowicz, John W. A. Rossen, Tomaž Mark Zorec, Katja Seme, Mario Poljak, Tatjana Lejko Zupanc, Eva Ružić-Sabljić, Tjaša Cerar

published 13 Apr 2020

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Can we use it? On the utility of de novo and reference-based assembly of Nanopore data for plant plastome sequencing

Agnes Scheunert, Marco Dorfner, Thomas Lingl, Christoph Oberprieler

published 24 Mar 2020

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Comparative analysis of novel MGISEQ-2000 sequencing platform vs Illumina HiSeq 2500 for whole-genome sequencing

Dmitriy Korostin, Nikolay Kulemin, Vladimir Naumov, Vera Belova, Dmitriy Kwon, Alexey Gorbachev

published 16 Mar 2020

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