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Genome sequencing

Choice of library preparation affects sequence quality, genome assembly, and precise in silico prediction of virulence genes in shiga toxin-producing Escherichia coli

Julie Haendiges, Karen Jinneman, Narjol Gonzalez-Escalona

published 24 Mar 2021

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Yeast grown in continuous culture systems can detect mutagens with improved sensitivity relative to the Ames test

Joseph Y. Ong, Julia T. Pence, David C. Molik, Heather A. M. Shepherd, Holly V. Goodson

published 17 Mar 2021

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Identification of two novel hepatitis C virus subtype 2 from Tunisia (2v and 2w)

Mouna Rajhi, Sondes Haddad-Boubaker, Anissa Chouikha, Daniel Bourquain, Janine Michel, Walid Hammami, Amel Sadraoui, Hinda Touzi, Kais Ghedira, Henda Triki

published 11 Mar 2021

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Frameshift variant in MITF gene in a large family with Waardenburg syndrome type II and a co-segregation of a C2orf74 variant

Maan Abdullah Albarry, Muhammad Latif, Ahdab Qasem Alreheli, Mohammed A. Awadh, Ahmad M. Almatrafi, Alia M. Albalawi, Sulman Basit

published 11 Feb 2021

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Mycoplasma agassizii, an opportunistic pathogen of tortoises, shows very little genetic variation across the Mojave and Sonoran Deserts

Agusto Luzuriaga-Neira, Franziska C. Sandmeier, Chava L. Weitzman, C. Richard Tracy, Shalyn N. Bauschlicher, Richard L. Tillett, David Alvarez-Ponce

published 03 Feb 2021

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Genome-based characterization of Escherichia coli causing bloodstream infection through next-generation sequencing

Rafika Indah Paramita, Erni Juwita Nelwan, Fadilah Fadilah, Editha Renesteen, Nelly Puspandari, Linda Erlina

published 23 Dec 2020

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Whole genome sequencing of Clostridioides difficile PCR ribotype 046 suggests transmission between pigs and humans

Anders Werner, Paula Mölling, Anna Fagerström, Fredrik Dyrkell, Dimitrios Arnellos, Karin Johansson, Martin Sundqvist, Torbjörn Norén

published 21 Dec 2020

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Taxonomic classification of strain PO100/5 shows a broader geographic distribution and genetic markers of the recently described Corynebacterium silvaticum

Marcus Vinicius Canário Viana, Rodrigo Profeta, Alessandra Lima da Silva, Raquel Hurtado, Janaína Canário Cerqueira, Bruna Ferreira Sampaio Ribeiro, Marcelle Oliveira Almeida, Francielly Morais-Rodrigues, Siomar de Castro Soares, Manuela Oliveira, Luís Tavares, Henrique Figueiredo, Alice Rebecca Wattam, Debmalya Barh, Preetam Ghosh, Artur Silva, Vasco Azevedo

published 21 Dec 2020

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Bioinformatics in Mexico: A diagnostic from the academic perspective and recommendations for a public policy

Dagoberto Armenta-Medina, Christian Díaz de León-Castañeda, Brenda Valderrama-Blanco

published 15 Dec 2020

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A haplotype-phased genome of wheat stripe rust pathogen Puccinia striiformis f. sp. tritici, race PST-130 from the Western USA

Hans Vasquez-Gross, Sukhwinder Kaur, Lynn Epstein, Jorge Dubcovsky

published 11 Nov 2020

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Investigating hospital Mycobacterium chelonae infection using whole genome sequencing and hybrid assembly

Christopher H. Gu, Chunyu Zhao, Casey Hofstaedter, Pablo Tebas, Laurel Glaser, Robert Baldassano, Kyle Bittinger, Lisa M. Mattei, Frederic D. Bushman

published 09 Nov 2020

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The major satellite DNA families of the diploid Chenopodium album aggregate species: Arguments for and against the “library hypothesis”

Alexander Belyayev, Michaela Jandová, Jiřina Josefiová, Ruslan Kalendar, Václav Mahelka, Bohumil Mandák, Karol Krak

published 27 Oct 2020

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A comparative study of single nucleotide variant detection performance using three massively parallel sequencing methods

Linea Christine Trudsø, Jeppe Dyrberg Andersen, Stine Bøttcher Jacobsen, Sofie Lindgren Christiansen, Clàudia Congost-Teixidor, Marie-Louise Kampmann, Niels Morling

published 28 Sep 2020

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