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Genome sequencing

High-molecular weight DNA extraction, clean-up and size selection for long-read sequencing

Ashley Jones, Cynthia Torkel, David Stanley, Jamila Nasim, Justin Borevitz, Benjamin Schwessinger

published 15 Jul 2021

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Whole genome sequencing identifies novel structural variant in a large Indian family affected with X-linked agammaglobulinemia

Abhinav Jain, Geeta Madathil Govindaraj, Athulya Edavazhippurath, Nabeel Faisal, Rahul C. Bhoyar, Vishu Gupta, Ramya Uppuluri, Shiny Padinjare Manakkad, Atul Kashyap, Anoop Kumar, Mohit Kumar Divakar, Mohamed Imran, Sneha Sawant, Aparna Dalvi, Krishnan Chakyar, Manisha Madkaikar, Revathi Raj, Sridhar Sivasubbu, Vinod Scaria

published 12 Jul 2021

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SARS-CoV-2 detection and genomic sequencing from hospital surface samples collected at UC Davis

David A. Coil, Timothy Albertson, Shefali Banerjee, Greg Brennan, A. J. Campbell, Stuart H. Cohen, Satya Dandekar, Samuel L. Díaz-Muñoz, Jonathan A. Eisen, Tracey Goldstein, Ivy R. Jose, Maya Juarez, Brandt A. Robinson, Stefan Rothenburg, Christian Sandrock, Ana M. M. Stoian, Daniel G. Tompkins, Alexandre Tremeau-Bravard, Angela Haczku

published 24 Jun 2021

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ddcP, pstB, and excess D-lactate impact synergism between vancomycin and chlorhexidine against Enterococcus faecium 1,231,410

Pooja Bhardwaj, Moutusee Z. Islam, Christi Kim, Uyen Thy Nguyen, Kelli L. Palmer

published 08 Apr 2021

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Choice of library preparation affects sequence quality, genome assembly, and precise in silico prediction of virulence genes in shiga toxin-producing Escherichia coli

Julie Haendiges, Karen Jinneman, Narjol Gonzalez-Escalona

published 24 Mar 2021

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Yeast grown in continuous culture systems can detect mutagens with improved sensitivity relative to the Ames test

Joseph Y. Ong, Julia T. Pence, David C. Molik, Heather A. M. Shepherd, Holly V. Goodson

published 17 Mar 2021

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Identification of two novel hepatitis C virus subtype 2 from Tunisia (2v and 2w)

Mouna Rajhi, Sondes Haddad-Boubaker, Anissa Chouikha, Daniel Bourquain, Janine Michel, Walid Hammami, Amel Sadraoui, Hinda Touzi, Kais Ghedira, Henda Triki

published 11 Mar 2021

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Frameshift variant in MITF gene in a large family with Waardenburg syndrome type II and a co-segregation of a C2orf74 variant

Maan Abdullah Albarry, Muhammad Latif, Ahdab Qasem Alreheli, Mohammed A. Awadh, Ahmad M. Almatrafi, Alia M. Albalawi, Sulman Basit

published 11 Feb 2021

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Mycoplasma agassizii, an opportunistic pathogen of tortoises, shows very little genetic variation across the Mojave and Sonoran Deserts

Agusto Luzuriaga-Neira, Franziska C. Sandmeier, Chava L. Weitzman, C. Richard Tracy, Shalyn N. Bauschlicher, Richard L. Tillett, David Alvarez-Ponce

published 03 Feb 2021

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Genome-based characterization of Escherichia coli causing bloodstream infection through next-generation sequencing

Rafika Indah Paramita, Erni Juwita Nelwan, Fadilah Fadilah, Editha Renesteen, Nelly Puspandari, Linda Erlina

published 23 Dec 2020

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Whole genome sequencing of Clostridioides difficile PCR ribotype 046 suggests transmission between pigs and humans

Anders Werner, Paula Mölling, Anna Fagerström, Fredrik Dyrkell, Dimitrios Arnellos, Karin Johansson, Martin Sundqvist, Torbjörn Norén

published 21 Dec 2020

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Taxonomic classification of strain PO100/5 shows a broader geographic distribution and genetic markers of the recently described Corynebacterium silvaticum

Marcus Vinicius Canário Viana, Rodrigo Profeta, Alessandra Lima da Silva, Raquel Hurtado, Janaína Canário Cerqueira, Bruna Ferreira Sampaio Ribeiro, Marcelle Oliveira Almeida, Francielly Morais-Rodrigues, Siomar de Castro Soares, Manuela Oliveira, Luís Tavares, Henrique Figueiredo, Alice Rebecca Wattam, Debmalya Barh, Preetam Ghosh, Artur Silva, Vasco Azevedo

published 21 Dec 2020

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Bioinformatics in Mexico: A diagnostic from the academic perspective and recommendations for a public policy

Dagoberto Armenta-Medina, Christian Díaz de León-Castañeda, Brenda Valderrama-Blanco

published 15 Dec 2020

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