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Genome sequencing

Genomic prediction using low-coverage portable Nanopore sequencing

Harrison J. Lamb, Ben J. Hayes, Imtiaz A. S. Randhawa, Loan T. Nguyen, Elizabeth M. Ross

published 15 Dec 2021

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Identification of individual root-knot nematodes using low coverage long-read sequencing

Graham S. Sellers, Daniel C. Jeffares, Bex Lawson, Tom Prior, David H. Lunt

published 01 Dec 2021

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Return of individual research results from genomic research: A systematic review of stakeholder perspectives

Danya F. Vears, Joel T. Minion, Stephanie J. Roberts, James Cummings, Mavis Machirori, Mwenza Blell, Isabelle Budin-Ljøsne, Lorraine Cowley, Stephanie O. M. Dyke, Clara Gaff, Robert Green, Alison Hall, Amber L. Johns, Bartha M. Knoppers, Stephanie Mulrine, Christine Patch, Eva Winkler, Madeleine J. Murtagh

published 08 Nov 2021

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Direct sequencing of measles virus complete genomes in the midst of a large-scale outbreak

Efrat Bucris, Victoria Indenbaum, Roberto Azar, Oran Erster, Eric Haas, Ella Mendelson, Neta S. Zuckerman

published 10 Sep 2021

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Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals

Harsha Doddapaneni, Sara Javornik Cregeen, Richard Sucgang, Qingchang Meng, Xiang Qin, Vasanthi Avadhanula, Hsu Chao, Vipin Menon, Erin Nicholson, David Henke, Felipe-Andres Piedra, Anubama Rajan, Zeineen Momin, Kavya Kottapalli, Kristi L. Hoffman, Fritz J. Sedlazeck, Ginger Metcalf, Pedro A. Piedra, Donna M. Muzny, Joseph F. Petrosino, Richard A. Gibbs

published 25 Aug 2021

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Prolonged detection of complete viral genomes demonstrated by SARS-CoV-2 sequencing of serial respiratory specimens

Neta S. Zuckerman, Efrat Bucris, Oran Erster, Michal Mandelboim, Amos Adler, Saar Burstein, Noam Protter, Moran Szwarcwort-Cohen, Ella Mendelson, Orna Mor

published 05 Aug 2021

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Molecular epidemiology of SARS-CoV-2 in Cyprus

Jan Richter, Pavlos Fanis, Christina Tryfonos, Dana Koptides, George Krashias, Stavros Bashiardes, Andreas Hadjisavvas, Maria Loizidou, Anastasis Oulas, Denise Alexandrou, Olga Kalakouta, Mihalis I. Panayiotidis, George M. Spyrou, Christina Christodoulou

published 21 Jul 2021

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High-molecular weight DNA extraction, clean-up and size selection for long-read sequencing

Ashley Jones, Cynthia Torkel, David Stanley, Jamila Nasim, Justin Borevitz, Benjamin Schwessinger

published 15 Jul 2021

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Whole genome sequencing identifies novel structural variant in a large Indian family affected with X-linked agammaglobulinemia

Abhinav Jain, Geeta Madathil Govindaraj, Athulya Edavazhippurath, Nabeel Faisal, Rahul C. Bhoyar, Vishu Gupta, Ramya Uppuluri, Shiny Padinjare Manakkad, Atul Kashyap, Anoop Kumar, Mohit Kumar Divakar, Mohamed Imran, Sneha Sawant, Aparna Dalvi, Krishnan Chakyar, Manisha Madkaikar, Revathi Raj, Sridhar Sivasubbu, Vinod Scaria

published 12 Jul 2021

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SARS-CoV-2 detection and genomic sequencing from hospital surface samples collected at UC Davis

David A. Coil, Timothy Albertson, Shefali Banerjee, Greg Brennan, A. J. Campbell, Stuart H. Cohen, Satya Dandekar, Samuel L. Díaz-Muñoz, Jonathan A. Eisen, Tracey Goldstein, Ivy R. Jose, Maya Juarez, Brandt A. Robinson, Stefan Rothenburg, Christian Sandrock, Ana M. M. Stoian, Daniel G. Tompkins, Alexandre Tremeau-Bravard, Angela Haczku

published 24 Jun 2021

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ddcP, pstB, and excess D-lactate impact synergism between vancomycin and chlorhexidine against Enterococcus faecium 1,231,410

Pooja Bhardwaj, Moutusee Z. Islam, Christi Kim, Uyen Thy Nguyen, Kelli L. Palmer

published 08 Apr 2021

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Choice of library preparation affects sequence quality, genome assembly, and precise in silico prediction of virulence genes in shiga toxin-producing Escherichia coli

Julie Haendiges, Karen Jinneman, Narjol Gonzalez-Escalona

published 24 Mar 2021

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Yeast grown in continuous culture systems can detect mutagens with improved sensitivity relative to the Ames test

Joseph Y. Ong, Julia T. Pence, David C. Molik, Heather A. M. Shepherd, Holly V. Goodson

published 17 Mar 2021

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