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Genome sequencing

Spontaneous rate of clonal single nucleotide mutations in Daphnia galeata

Markus Pfenninger, Halina Binde Doria, Jana Nickel, Anne Thielsch, Klaus Schwenk, Mathilde Cordellier

published 01 Apr 2022

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A chromosome-level genome sequence assembly of the red raspberry (Rubus idaeus L.)

Jahn Davik, Dag Røen, Erik Lysøe, Matteo Buti, Simeon Rossman, Muath Alsheikh, Erez Lieberman Aiden, Olga Dudchenko, Daniel James Sargent

published 16 Mar 2022

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Implementation of a COVID-19 Genomic Surveillance Regional Network for Latin America and Caribbean region

Juliana Almeida Leite, Andrea Vicari, Enrique Perez, Marilda Siqueira, Paola Resende, Fernando Couto Motta, Lucas Freitas, Jorge Fernandez, Barbara Parra, Andrés Castillo, Rodrigo Fasce, Alexander Augusto Martinez Caballero, COVID-19 Genomic Surveillance Regional Network , Lionel Gresh, Sylvain Aldighieri, Jean-Marc Gabastou, Leticia Franco, Jairo Mendez-Rico

published 03 Mar 2022

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Sequencing SARS-CoV-2 from antigen tests

Ashley Nazario-Toole, Holly M. Nguyen, Hui Xia, Dianne N. Frankel, John W. Kieffer, Thomas F. Gibbons

published 08 Feb 2022

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Characterization of the chloroplast genome of Lonicera ruprechtiana Regel and comparison with other selected species of Caprifoliaceae

Lei Gu, Yunyan Hou, Guangyi Wang, Qiuping Liu, Wei Ding, Qingbei Weng

published 25 Jan 2022

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Evolutionary paths to macrolide resistance in a Neisseria commensal converge on ribosomal genes through short sequence duplications

Jordan C. Raisman, Michael A. Fiore, Lucille Tomin, Joseph K. O. Adjei, Virginia X. Aswad, Jonathan Chu, Christina J. Domondon, Ben A. Donahue, Claudia A. Masciotti, Connor G. McGrath, Jo Melita, Paul A. Podbielski, Madelyn R. Schreiner, Lauren J. Trumpore, Peter C. Wengert, Emalee A. Wrightstone, André O. Hudson, Crista B. Wadsworth

published 13 Jan 2022

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A short plus long-amplicon based sequencing approach improves genomic coverage and variant detection in the SARS-CoV-2 genome

Carlos Arana, Chaoying Liang, Matthew Brock, Bo Zhang, Jinchun Zhou, Li Chen, Brandi Cantarel, Jeffrey SoRelle, Lora V. Hooper, Prithvi Raj

published 13 Jan 2022

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Detection of MDM2 amplification by shallow whole genome sequencing of cell-free DNA of patients with dedifferentiated liposarcoma

Joanna Przybyl, Lien Spans, Kristen Ganjoo, Nam Bui, David Mohler, Jeffrey Norton, George Poultsides, Maria Debiec-Rychter, Matt van de Rijn

published 05 Jan 2022

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Whole-genome based strain identification of fowlpox virus directly from cutaneous tissue and propagated virus

Kinza Asif, Denise O’Rourke, Alistair R. Legione, Pollob Shil, Marc S. Marenda, Amir H. Noormohammadi

published 16 Dec 2021

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Genomic prediction using low-coverage portable Nanopore sequencing

Harrison J. Lamb, Ben J. Hayes, Imtiaz A. S. Randhawa, Loan T. Nguyen, Elizabeth M. Ross

published 15 Dec 2021

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Identification of individual root-knot nematodes using low coverage long-read sequencing

Graham S. Sellers, Daniel C. Jeffares, Bex Lawson, Tom Prior, David H. Lunt

published 01 Dec 2021

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Return of individual research results from genomic research: A systematic review of stakeholder perspectives

Danya F. Vears, Joel T. Minion, Stephanie J. Roberts, James Cummings, Mavis Machirori, Mwenza Blell, Isabelle Budin-Ljøsne, Lorraine Cowley, Stephanie O. M. Dyke, Clara Gaff, Robert Green, Alison Hall, Amber L. Johns, Bartha M. Knoppers, Stephanie Mulrine, Christine Patch, Eva Winkler, Madeleine J. Murtagh

published 08 Nov 2021

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Direct sequencing of measles virus complete genomes in the midst of a large-scale outbreak

Efrat Bucris, Victoria Indenbaum, Roberto Azar, Oran Erster, Eric Haas, Ella Mendelson, Neta S. Zuckerman

published 10 Sep 2021

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