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Genome sequencing

Genotype imputation and polygenic score estimation in northwestern Russian population

Nikita Kolosov, Valeriia Rezapova, Oxana Rotar, Alexander Loboda, Olga Freylikhman, Olesya Melnik, Alexey Sergushichev, Christine Stevens, Trudy Voortman, Anna Kostareva, Alexandra Konradi, Mark J. Daly, Mykyta Artomov

published 28 Jun 2022

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Evaluation of a commercial SARS-CoV-2 multiplex PCR genotyping assay for variant identification in resource-scarce settings

Chijioke N. Umunnakwe, Zinhle N. Makatini, Mathapelo Maphanga, Anele Mdunyelwa, Khamusi M. Mlambo, Puseletso Manyaka, Monique Nijhuis, Annemarie Wensing, Hugo A. Tempelman

published 24 Jun 2022

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MAECI: A pipeline for generating consensus sequence with nanopore sequencing long-read assembly and error correction

Jidong Lang

published 20 May 2022

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Comparison of different sequencing techniques for identification of SARS-CoV-2 variants of concern with multiplex real-time PCR

Diyanath Ranasinghe, Tibutius Thanesh Pramanayagam Jayadas, Deshni Jayathilaka, Chandima Jeewandara, Osanda Dissanayake, Dinuka Guruge, Dinuka Ariyaratne, Dumni Gunasinghe, Laksiri Gomes, Ayesha Wijesinghe, Ruwan Wijayamuni, Gathsaurie Neelika Malavige

published 04 Apr 2022

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Spontaneous rate of clonal single nucleotide mutations in Daphnia galeata

Markus Pfenninger, Halina Binde Doria, Jana Nickel, Anne Thielsch, Klaus Schwenk, Mathilde Cordellier

published 01 Apr 2022

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A chromosome-level genome sequence assembly of the red raspberry (Rubus idaeus L.)

Jahn Davik, Dag Røen, Erik Lysøe, Matteo Buti, Simeon Rossman, Muath Alsheikh, Erez Lieberman Aiden, Olga Dudchenko, Daniel James Sargent

published 16 Mar 2022

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Implementation of a COVID-19 Genomic Surveillance Regional Network for Latin America and Caribbean region

Juliana Almeida Leite, Andrea Vicari, Enrique Perez, Marilda Siqueira, Paola Resende, Fernando Couto Motta, Lucas Freitas, Jorge Fernandez, Barbara Parra, Andrés Castillo, Rodrigo Fasce, Alexander Augusto Martinez Caballero, COVID-19 Genomic Surveillance Regional Network , Lionel Gresh, Sylvain Aldighieri, Jean-Marc Gabastou, Leticia Franco, Jairo Mendez-Rico

published 03 Mar 2022

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Sequencing SARS-CoV-2 from antigen tests

Ashley Nazario-Toole, Holly M. Nguyen, Hui Xia, Dianne N. Frankel, John W. Kieffer, Thomas F. Gibbons

published 08 Feb 2022

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Characterization of the chloroplast genome of Lonicera ruprechtiana Regel and comparison with other selected species of Caprifoliaceae

Lei Gu, Yunyan Hou, Guangyi Wang, Qiuping Liu, Wei Ding, Qingbei Weng

published 25 Jan 2022

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Evolutionary paths to macrolide resistance in a Neisseria commensal converge on ribosomal genes through short sequence duplications

Jordan C. Raisman, Michael A. Fiore, Lucille Tomin, Joseph K. O. Adjei, Virginia X. Aswad, Jonathan Chu, Christina J. Domondon, Ben A. Donahue, Claudia A. Masciotti, Connor G. McGrath, Jo Melita, Paul A. Podbielski, Madelyn R. Schreiner, Lauren J. Trumpore, Peter C. Wengert, Emalee A. Wrightstone, André O. Hudson, Crista B. Wadsworth

published 13 Jan 2022

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A short plus long-amplicon based sequencing approach improves genomic coverage and variant detection in the SARS-CoV-2 genome

Carlos Arana, Chaoying Liang, Matthew Brock, Bo Zhang, Jinchun Zhou, Li Chen, Brandi Cantarel, Jeffrey SoRelle, Lora V. Hooper, Prithvi Raj

published 13 Jan 2022

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Detection of MDM2 amplification by shallow whole genome sequencing of cell-free DNA of patients with dedifferentiated liposarcoma

Joanna Przybyl, Lien Spans, Kristen Ganjoo, Nam Bui, David Mohler, Jeffrey Norton, George Poultsides, Maria Debiec-Rychter, Matt van de Rijn

published 05 Jan 2022

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Whole-genome based strain identification of fowlpox virus directly from cutaneous tissue and propagated virus

Kinza Asif, Denise O’Rourke, Alistair R. Legione, Pollob Shil, Marc S. Marenda, Amir H. Noormohammadi

published 16 Dec 2021

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