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Genome sequencing

Genome-Wide Massively Parallel Sequencing of Formaldehyde Fixed-Paraffin Embedded (FFPE) Tumor Tissues for Copy-Number- and Mutation-Analysis

Michal R. Schweiger, Martin Kerick, [ ... ], Hans Lehrach

STORMSeq: An Open-Source, User-Friendly Pipeline for Processing Personal Genomics Data in the Cloud

Konrad J. Karczewski, Guy Haskin Fernald, [ ... ], Joel T. Dudley

Genome-Wide Mapping of Copy Number Variation in Humans: Comparative Analysis of High Resolution Array Platforms

Rajini R. Haraksingh, Alexej Abyzov, [ ... ], Michael Snyder

Advantages of Single-Molecule Real-Time Sequencing in High-GC Content Genomes

Seung Chul Shin, Do Hwan Ahn, [ ... ], Hyun Park

Ligation Bias in Illumina Next-Generation DNA Libraries: Implications for Sequencing Ancient Genomes

Andaine Seguin-Orlando, Mikkel Schubert, [ ... ], Ludovic Orlando

Comparison of Three Targeted Enrichment Strategies on the SOLiD Sequencing Platform

Dale J. Hedges, Toumy Guettouche, [ ... ], John R. Gilbert

The “Most Wanted” Taxa from the Human Microbiome for Whole Genome Sequencing

Anthony A. Fodor, Todd Z. DeSantis, [ ... ], Ashlee M. Earl

Whole Methylome Analysis by Ultra-Deep Sequencing Using Two-Base Encoding

Christina A. Bormann Chung, Victoria L. Boyd, [ ... ], Melissa Barker

Consensus Rules in Variant Detection from Next-Generation Sequencing Data

Peilin Jia, Fei Li, [ ... ], Zhongming Zhao

Coverage Bias and Sensitivity of Variant Calling for Four Whole-genome Sequencing Technologies

Nora Rieber, Marc Zapatka, [ ... ], Roland Eils

Phenotype Sequencing: Identifying the Genes That Cause a Phenotype Directly from Pooled Sequencing of Independent Mutants

Marc A. Harper, Zugen Chen, [ ... ], Christopher J. Lee

A Metagenomic Analysis of Pandemic Influenza A (2009 H1N1) Infection in Patients from North America

Alexander L. Greninger, Eunice C. Chen, [ ... ], Charles Y. Chiu

Disentangling primer interactions improves SARS-CoV-2 genome sequencing by multiplex tiling PCR

Kentaro Itokawa, Tsuyoshi Sekizuka, [ ... ], Makoto Kuroda

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