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Genome sequencing

A comprehensive performance analysis of sequence-based within-sample testing NIPT methods

Tom Mokveld, Zaid Al-Ars, Erik A. Sistermans, Marcel Reinders

published 14 Apr 2023

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Optimised protocol for monitoring SARS-CoV-2 in wastewater using reverse complement PCR-based whole-genome sequencing

Harry T. Child, Paul A. O’Neill, Karen Moore, William Rowe, Hubert Denise, David Bass, Matthew J. Wade, Matt Loose, Steve Paterson, Ronny van Aerle, Aaron R. Jeffries

published 14 Apr 2023

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Clonal isolates of Treponema pallidum subsp. pallidum Nichols provide evidence for the occurrence of microevolution during experimental rabbit infection and in vitro culture

Diane G. Edmondson, Bridget D. De Lay, Blake M. Hanson, Lindsay E. Kowis, Steven J. Norris

published 14 Mar 2023

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GAMBIT (Genomic Approximation Method for Bacterial Identification and Tracking): A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification

Jared Lumpe, Lynette Gumbleton, Andrew Gorzalski, Kevin Libuit, Vici Varghese, Tyler Lloyd, Farid Tadros, Tyler Arsimendi, Eileen Wagner, Craig Stephens, Joel Sevinsky, David Hess, Mark Pandori

published 16 Feb 2023

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Cost-conscious generation of multiplexed short-read DNA libraries for whole-genome sequencing

Ashley Jones, David Stanley, Scott Ferguson, Benjamin Schwessinger, Justin Borevitz, Norman Warthmann

published 27 Jan 2023

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Awareness, understanding, and interest in personalized medicine: A cross-sectional survey study of college students

Yingke Xu, Qing Wu

published 25 Jan 2023

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SARS-CoV-2 genotyping and sequencing following a simple and economical RNA extraction and storage protocol

Sarah Hernandez, Phuong-Vi Nguyen, Taz Azmain, Anne Piantadosi, Jesse J. Waggoner

published 19 Jan 2023

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Optimized conditions for Listeria, Salmonella and Escherichia whole genome sequencing using the Illumina iSeq100 platform with point-and-click bioinformatic analysis

Sonsiray Alvarez Narvaez, Zhenyu Shen, Lifang Yan, Brianna L. S. Stenger, Laura B. Goodman, Ailam Lim, Ruth H. Nissly, Meera Surendran Nair, Shuping Zhang, Susan Sanchez

published 30 Nov 2022

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Genetic characterization of a novel pheasant-origin orthoreovirus using Next-Generation Sequencing

Yi Tang, Haiyang Yu, Xiaoning Jiang, Endong Bao, Dong Wang, Huaguang Lu

published 21 Nov 2022

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Novel genotyping algorithms for rare variants significantly improve the accuracy of Applied Biosystems™ Axiom™ array genotyping calls: Retrospective evaluation of UK Biobank array data

Orna Mizrahi-Man, Marcos H. Woehrmann, Teresa A. Webster, Jeremy Gollub, Adrian Bivol, Sara M. Keeble, Katherine H. Aull, Anuradha Mittal, Alan H. Roter, Brant A. Wong, Jeanette P. Schmidt

published 17 Nov 2022

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Phylodynamics of a regional SARS-CoV-2 rapid spreading event in Colorado in late 2020

Kristen J. Wade, Samantha Tisa, Chloe Barrington, Jesslyn C. Henriksen, Kristy R. Crooks, Christopher R. Gignoux, Austin T. Almand, J. Jordan Steel, John C. Sitko, Joseph W. Rohrer, Douglas P. Wickert, Erin A. Almand, David D. Pollock, Olivia S. Rissland

published 04 Oct 2022

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Validation of reduced S-gene target performance and failure for rapid surveillance of SARS-CoV-2 variants

Cyndi Clark, Joshua Schrecker, Matthew Hardison, Michael S. Taitel

published 03 Oct 2022

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Rapid genotyping of targeted viral samples using Illumina short-read sequencing data

Alex Váradi, Eszter Kaszab, Gábor Kardos, Eszter Prépost, Krisztina Szarka, Levente Laczkó

published 16 Sep 2022

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