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Genome sequencing

Phylodynamics of a regional SARS-CoV-2 rapid spreading event in Colorado in late 2020

Kristen J. Wade, Samantha Tisa, Chloe Barrington, Jesslyn C. Henriksen, Kristy R. Crooks, Christopher R. Gignoux, Austin T. Almand, J. Jordan Steel, John C. Sitko, Joseph W. Rohrer, Douglas P. Wickert, Erin A. Almand, David D. Pollock, Olivia S. Rissland

published 04 Oct 2022

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Validation of reduced S-gene target performance and failure for rapid surveillance of SARS-CoV-2 variants

Cyndi Clark, Joshua Schrecker, Matthew Hardison, Michael S. Taitel

published 03 Oct 2022

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Rapid genotyping of targeted viral samples using Illumina short-read sequencing data

Alex Váradi, Eszter Kaszab, Gábor Kardos, Eszter Prépost, Krisztina Szarka, Levente Laczkó

published 16 Sep 2022

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Histological characterization of anther structure in Tetep-cytoplasmic male sterility and fine mapping of restorer-of-fertility gene in rice

Seung Young Lee, Zhuo Jin, Su Jang, Backki Kim, Jeonghwan Seo, Hee-Jong Koh

published 18 Aug 2022

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ClinPharmSeq: A targeted sequencing panel for clinical pharmacogenetics implementation

Seung-been Lee, Jong-Yeon Shin, Nak-Jung Kwon, Changhoon Kim, Jeong-Sun Seo

published 28 Jul 2022

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Evaluation of high molecular weight DNA extraction methods for long-read sequencing of Shiga toxin-producing Escherichia coli

Sandra Jaudou, Mai-Lan Tran, Fabien Vorimore, Patrick Fach, Sabine Delannoy

published 13 Jul 2022

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Genotype imputation and polygenic score estimation in northwestern Russian population

Nikita Kolosov, Valeriia Rezapova, Oxana Rotar, Alexander Loboda, Olga Freylikhman, Olesya Melnik, Alexey Sergushichev, Christine Stevens, Trudy Voortman, Anna Kostareva, Alexandra Konradi, Mark J. Daly, Mykyta Artomov

published 28 Jun 2022

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Evaluation of a commercial SARS-CoV-2 multiplex PCR genotyping assay for variant identification in resource-scarce settings

Chijioke N. Umunnakwe, Zinhle N. Makatini, Mathapelo Maphanga, Anele Mdunyelwa, Khamusi M. Mlambo, Puseletso Manyaka, Monique Nijhuis, Annemarie Wensing, Hugo A. Tempelman

published 24 Jun 2022

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MAECI: A pipeline for generating consensus sequence with nanopore sequencing long-read assembly and error correction

Jidong Lang

published 20 May 2022

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Comparison of different sequencing techniques for identification of SARS-CoV-2 variants of concern with multiplex real-time PCR

Diyanath Ranasinghe, Tibutius Thanesh Pramanayagam Jayadas, Deshni Jayathilaka, Chandima Jeewandara, Osanda Dissanayake, Dinuka Guruge, Dinuka Ariyaratne, Dumni Gunasinghe, Laksiri Gomes, Ayesha Wijesinghe, Ruwan Wijayamuni, Gathsaurie Neelika Malavige

published 04 Apr 2022

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Spontaneous rate of clonal single nucleotide mutations in Daphnia galeata

Markus Pfenninger, Halina Binde Doria, Jana Nickel, Anne Thielsch, Klaus Schwenk, Mathilde Cordellier

published 01 Apr 2022

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A chromosome-level genome sequence assembly of the red raspberry (Rubus idaeus L.)

Jahn Davik, Dag Røen, Erik Lysøe, Matteo Buti, Simeon Rossman, Muath Alsheikh, Erez Lieberman Aiden, Olga Dudchenko, Daniel James Sargent

published 16 Mar 2022

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Implementation of a COVID-19 Genomic Surveillance Regional Network for Latin America and Caribbean region

Juliana Almeida Leite, Andrea Vicari, Enrique Perez, Marilda Siqueira, Paola Resende, Fernando Couto Motta, Lucas Freitas, Jorge Fernandez, Barbara Parra, Andrés Castillo, Rodrigo Fasce, Alexander Augusto Martinez Caballero, COVID-19 Genomic Surveillance Regional Network , Lionel Gresh, Sylvain Aldighieri, Jean-Marc Gabastou, Leticia Franco, Jairo Mendez-Rico

published 03 Mar 2022

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