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Genome sequencing

Optimized conditions for Listeria, Salmonella and Escherichia whole genome sequencing using the Illumina iSeq100 platform with point-and-click bioinformatic analysis

Sonsiray Alvarez Narvaez, Zhenyu Shen, Lifang Yan, Brianna L. S. Stenger, Laura B. Goodman, Ailam Lim, Ruth H. Nissly, Meera Surendran Nair, Shuping Zhang, Susan Sanchez

published 30 Nov 2022

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Genetic characterization of a novel pheasant-origin orthoreovirus using Next-Generation Sequencing

Yi Tang, Haiyang Yu, Xiaoning Jiang, Endong Bao, Dong Wang, Huaguang Lu

published 21 Nov 2022

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Novel genotyping algorithms for rare variants significantly improve the accuracy of Applied Biosystems™ Axiom™ array genotyping calls: Retrospective evaluation of UK Biobank array data

Orna Mizrahi-Man, Marcos H. Woehrmann, Teresa A. Webster, Jeremy Gollub, Adrian Bivol, Sara M. Keeble, Katherine H. Aull, Anuradha Mittal, Alan H. Roter, Brant A. Wong, Jeanette P. Schmidt

published 17 Nov 2022

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Phylodynamics of a regional SARS-CoV-2 rapid spreading event in Colorado in late 2020

Kristen J. Wade, Samantha Tisa, Chloe Barrington, Jesslyn C. Henriksen, Kristy R. Crooks, Christopher R. Gignoux, Austin T. Almand, J. Jordan Steel, John C. Sitko, Joseph W. Rohrer, Douglas P. Wickert, Erin A. Almand, David D. Pollock, Olivia S. Rissland

published 04 Oct 2022

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Validation of reduced S-gene target performance and failure for rapid surveillance of SARS-CoV-2 variants

Cyndi Clark, Joshua Schrecker, Matthew Hardison, Michael S. Taitel

published 03 Oct 2022

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Rapid genotyping of targeted viral samples using Illumina short-read sequencing data

Alex Váradi, Eszter Kaszab, Gábor Kardos, Eszter Prépost, Krisztina Szarka, Levente Laczkó

published 16 Sep 2022

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Histological characterization of anther structure in Tetep-cytoplasmic male sterility and fine mapping of restorer-of-fertility gene in rice

Seung Young Lee, Zhuo Jin, Su Jang, Backki Kim, Jeonghwan Seo, Hee-Jong Koh

published 18 Aug 2022

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ClinPharmSeq: A targeted sequencing panel for clinical pharmacogenetics implementation

Seung-been Lee, Jong-Yeon Shin, Nak-Jung Kwon, Changhoon Kim, Jeong-Sun Seo

published 28 Jul 2022

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Evaluation of high molecular weight DNA extraction methods for long-read sequencing of Shiga toxin-producing Escherichia coli

Sandra Jaudou, Mai-Lan Tran, Fabien Vorimore, Patrick Fach, Sabine Delannoy

published 13 Jul 2022

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Genotype imputation and polygenic score estimation in northwestern Russian population

Nikita Kolosov, Valeriia Rezapova, Oxana Rotar, Alexander Loboda, Olga Freylikhman, Olesya Melnik, Alexey Sergushichev, Christine Stevens, Trudy Voortman, Anna Kostareva, Alexandra Konradi, Mark J. Daly, Mykyta Artomov

published 28 Jun 2022

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Evaluation of a commercial SARS-CoV-2 multiplex PCR genotyping assay for variant identification in resource-scarce settings

Chijioke N. Umunnakwe, Zinhle N. Makatini, Mathapelo Maphanga, Anele Mdunyelwa, Khamusi M. Mlambo, Puseletso Manyaka, Monique Nijhuis, Annemarie Wensing, Hugo A. Tempelman

published 24 Jun 2022

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MAECI: A pipeline for generating consensus sequence with nanopore sequencing long-read assembly and error correction

Jidong Lang

published 20 May 2022

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Comparison of different sequencing techniques for identification of SARS-CoV-2 variants of concern with multiplex real-time PCR

Diyanath Ranasinghe, Tibutius Thanesh Pramanayagam Jayadas, Deshni Jayathilaka, Chandima Jeewandara, Osanda Dissanayake, Dinuka Guruge, Dinuka Ariyaratne, Dumni Gunasinghe, Laksiri Gomes, Ayesha Wijesinghe, Ruwan Wijayamuni, Gathsaurie Neelika Malavige

published 04 Apr 2022

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