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Genome sequencing

Complete genome assembly of Hawai’i environmental nontuberculous mycobacteria reveals unexpected co-isolation with methylobacteria

Jo Hendrix, L. Elaine Epperson, [ ... ], Michael Strong

MetaCONNET: A metagenomic polishing tool for long-read assemblies

Bingru Sun, Jian Guo, [ ... ], Hui Tian

SARS-CoV-2 genotyping and sequencing following a simple and economical RNA extraction and storage protocol

Sarah Hernandez, Phuong-Vi Nguyen, [ ... ], Jesse J. Waggoner

MAGNET-seq: A tandem PCR and hybrid capture method for enhanced target enrichment

Dongin Lee, Taehoon Kim, Duhee Bang

Efficient wastewater sample filtration improves the detection of SARS-CoV-2 variants: An extensive analysis based on sequencing parameters

Angelo Robotto, Carlotta Olivero, [ ... ], Denis Polato

Whole genome sequences of nine Taylorella equigenitalis strains isolated in the Czech Republic between 1982–2021: Molecular dating suggests a common ancestor at the time of Roman Empire

Matěj Hrala, Petr Andrla, [ ... ], David Šmajs

Transcriptome sequencing and screening of genes related to the MADS-box gene family in Clematis courtoisii

Mingjian Chen, Linfang Li, [ ... ], Ya Li

Characterization and whole genome sequencing of Saccharomyces cerevisiae strains lacking several amino acid transporters: Tools for studying amino acid transport

Unnati Sonawala, Aymeric Busidan, David Haak, Guillaume Pilot

Phylodynamics of a regional SARS-CoV-2 rapid spreading event in Colorado in late 2020

Kristen J. Wade, Samantha Tisa, [ ... ], Olivia S. Rissland

Deciphering mixed infections by plant RNA virus and reconstructing complete genomes simultaneously present within-host

Martine Bangratz, Aurore Comte, [ ... ], Charlotte Tollenaere

Avirulence of a spontaneous Francisella tularensis subsp. mediasiatica prmA mutant

Vitalii Timofeev, Irina Bakhteeva, [ ... ], Gilles Vergnaud

Rapidly obtaining genome sequence of Severe Fever with Thrombocytopenia Syndrome virus directly from clinical serum specimen using long amplicon based nanopore sequencing workflow

Tingting Tian, Yanhan Wen, [ ... ], Mifang Liang

TBpore cluster: A novel phylogenetic pipeline for tuberculosis transmission studies using nanopore next-generation sequencing data

Sophie Gagnon, Emmanuelle Ametepe, [ ... ], Simon Grandjean Lapierre

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