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Genome sequencing

Read Length and Repeat Resolution: Exploring Prokaryote Genomes Using Next-Generation Sequencing Technologies

Matt J. Cahill, Claudio U. Köser, Nicholas E. Ross, John A. C. Archer

published 12 Jul 2010

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Utilizing Genotype Imputation for the Augmentation of Sequence Data

Brooke L. Fridley, Gregory Jenkins, Matthew E. Deyo-Svendsen, Scott Hebbring, Robert Freimuth

published 08 Jun 2010

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De Novo Assembly of the Complete Genome of an Enhanced Electricity-Producing Variant of Geobacter sulfurreducens Using Only Short Reads

Harish Nagarajan, Jessica E. Butler, Anna Klimes, Yu Qiu, Karsten Zengler, Joy Ward, Nelson D. Young, Barbara A. Methé, Bernhard Ø. Palsson, Derek R. Lovley, Christian L. Barrett

published 08 Jun 2010

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Investigating the Epigenetic Effects of a Prototype Smoke-Derived Carcinogen in Human Cells

Stella Tommasi, Sang-in Kim, Xueyan Zhong, Xiwei Wu, Gerd P. Pfeifer, Ahmad Besaratinia

published 12 May 2010

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Whole Methylome Analysis by Ultra-Deep Sequencing Using Two-Base Encoding

Christina A. Bormann Chung, Victoria L. Boyd, Kevin J. McKernan, Yutao Fu, Cinna Monighetti, Heather E. Peckham, Melissa Barker

published 22 Feb 2010

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Analysis of High-Throughput Sequencing and Annotation Strategies for Phage Genomes

Matthew R. Henn, Matthew B. Sullivan, Nicole Stange-Thomann, Marcia S. Osburne, Aaron M. Berlin, Libusha Kelly, Chandri Yandava, Chinnappa Kodira, Qiandong Zeng, Michael Weiand, Todd Sparrow, Sakina Saif, Georgia Giannoukos, Sarah K. Young, Chad Nusbaum, Bruce W. Birren, Sallie W. Chisholm

published 05 Feb 2010

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The Feasibility of Using High Resolution Genome Sequencing of Influenza A Viruses to Detect Mixed Infections and Quasispecies

Muthannan A. Ramakrishnan, Zheng Jin Tu, Sushmita Singh, Ashok K. Chockalingam, Marie R. Gramer, Ping Wang, Sagar M. Goyal, My Yang, David A. Halvorson, Srinand Sreevatsan

published 22 Sep 2009

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Whole Genome Amplification and De novo Assembly of Single Bacterial Cells

Sébastien Rodrigue, Rex R. Malmstrom, Aaron M. Berlin, Bruce W. Birren, Matthew R. Henn, Sallie W. Chisholm

published 02 Sep 2009

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Detection of Genomic Variation by Selection of a 9 Mb DNA Region and High Throughput Sequencing

Sergey I. Nikolaev, Christian Iseli, Andrew J. Sharp, Daniel Robyr, Jacques Rougemont, Corinne Gehrig, Laurent Farinelli, Stylianos E. Antonarakis

published 17 Aug 2009

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Design of a High Density SNP Genotyping Assay in the Pig Using SNPs Identified and Characterized by Next Generation Sequencing Technology

Antonio M. Ramos, Richard P. M. A. Crooijmans, Nabeel A. Affara, Andreia J. Amaral, Alan L. Archibald, Jonathan E. Beever, Christian Bendixen, Carol Churcher, Richard Clark, Patrick Dehais, Mark S. Hansen, Jakob Hedegaard, Zhi-Liang Hu, Hindrik H. Kerstens, Andy S. Law, Hendrik-Jan Megens, Denis Milan, Danny J. Nonneman, Gary A. Rohrer, Max F. Rothschild, Tim P. L. Smith, Robert D. Schnabel, Curt P. Van Tassell, Jeremy F. Taylor, Ralph T. Wiedmann, Lawrence B. Schook, Martien A. M. Groenen

published 05 Aug 2009

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A Flood of Microbial Genomes–Do We Need More?

Niyaz Ahmed

published 09 Jun 2009

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Genome-Wide Massively Parallel Sequencing of Formaldehyde Fixed-Paraffin Embedded (FFPE) Tumor Tissues for Copy-Number- and Mutation-Analysis

Michal R. Schweiger, Martin Kerick, Bernd Timmermann, Marcus W. Albrecht, Tatjana Borodina, Dmitri Parkhomchuk, Kurt Zatloukal, Hans Lehrach

published 14 May 2009

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New Population and Phylogenetic Features of the Internal Variation within Mitochondrial DNA Macro-Haplogroup R0

Vanesa Álvarez-Iglesias, Ana Mosquera-Miguel, Maria Cerezo, Beatriz Quintáns, Maria Teresa Zarrabeitia, Ivon Cuscó, Maria Victoria Lareu, Óscar García, Luis Pérez-Jurado, Ángel Carracedo, Antonio Salas

published 02 Apr 2009

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