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Genome sequencing

Extraction and selection of high-molecular-weight DNA for long-read sequencing from Chlamydomonas reinhardtii

Frédéric Chaux, Nicolas Agier, Stephan Eberhard, Zhou Xu

published 08 Feb 2024

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Transcriptome sequencing and screening of genes related to the MADS-box gene family in Clematis courtoisii

Mingjian Chen, Linfang Li, Shu’an Wang, Peng Wang, Ya Li

published 05 Feb 2024

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Kuura—An automated workflow for analyzing WES and WGS data

Dhanaprakash Jambulingam, Venkat Subramaniam Rathinakannan, Samuel Heron, Johanna Schleutker, Vidal Fey

published 18 Jan 2024

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SVvalidation: A long-read-based validation method for genomic structural variation

Yan Zheng, Xuequn Shang

published 05 Jan 2024

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Reduced representation approaches produce similar results to whole genome sequencing for some common phylogeographic analyses

Drew J. Duckett, Kailee Calder, Jack Sullivan, David C. Tank, Bryan C. Carstens

published 30 Nov 2023

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Rapid and collective determination of the complete “hot-spring frog” mitochondrial genome containing long repeat regions using Nanopore sequencing

Yuka Asaeda, Kento Shiraga, Makoto Suzuki, Yoshihiro Sambongi, Hajime Ogino, Takeshi Igawa

published 31 Oct 2023

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Complete genome assembly of Hawai’i environmental nontuberculous mycobacteria reveals unexpected co-isolation with methylobacteria

Jo Hendrix, L. Elaine Epperson, Eric I. Tong, Yvonne L. Chan, Nabeeh A. Hasan, Stephanie N. Dawrs, Grant J. Norton, Ravleen Virdi, James L. Crooks, Edward D. Chan, Jennifer R. Honda, Michael Strong

published 13 Sep 2023

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From chip to SNP: Rapid development and evaluation of a targeted capture genotyping-by-sequencing approach to support research and management of a plaguing rodent

Kevin P. Oh, Nikki Van de Weyer, Wendy A. Ruscoe, Steve Henry, Peter R. Brown

published 17 Aug 2023

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Evaluation of an optimized germline exomes pipeline using BWA-MEM2 and Dragen-GATK tools

Nofe Alganmi, Heba Abusamra

published 03 Aug 2023

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Antigen concentration, viral load, and test performance for SARS-CoV-2 in multiple specimen types

Allison Golden, Michelle Oliveira-Silva, Hannah Slater, Alexia Martines Vieira, Pooja Bansil, Emily Gerth-Guyette, Brandon T. Leader, Stephanie Zobrist, Alan Kennedy Braga Ferreira, Erika Crhistina Santos de Araujo, Catherine Duran de Lucena Cruz, Eduardo Garbin, Greg T. Bizilj, Sean J. Carlson, Mariana Sagalovsky, Sampa Pal, Vin Gupta, Leo Wolansky, David S. Boyle, Deusilene Souza Vieira Dall’Acqua, Felipe Gomes Naveca, Valdinete Alves do Nascimento, Juan Miguel Villalobos Salcedo, Paul K. Drain, Alexandre Dias Tavares Costa, Dhélio Pereira, Gonzalo J. Domingo

published 19 Jul 2023

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Rapid genotyping of porcine reproductive and respiratory syndrome virus (PRRSV) using MinION nanopore sequencing

Leonardo Cardia Caserta, Jianqiang Zhang, Pablo Piñeyro, Diego G. Diel

published 23 May 2023

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Chromosome-scale genome sequence assemblies of the ‘Autumn Bliss’ and ‘Malling Jewel’ cultivars of the highly heterozygous red raspberry (Rubus idaeus L.) derived from long-read Oxford Nanopore sequence data

R. Jordan Price, Jahn Davik, Felicidad Fernandéz Fernandéz, Helen J. Bates, Samantha Lynn, Charlotte F. Nellist, Matteo Buti, Dag Røen, Nada Šurbanovski, Muath Alsheikh, Richard J. Harrison, Daniel James Sargent

published 16 May 2023

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Evaluation of miniaturized Illumina DNA preparation protocols for SARS-CoV-2 whole genome sequencing

Sureshnee Pillay, James Emmanuel San, Derek Tshiabuila, Yeshnee Naidoo, Yusasha Pillay, Akhil Maharaj, Ugochukwu J. Anyaneji, Eduan Wilkinson, Houriiyah Tegally, Richard J. Lessells, Cheryl Baxter, Tulio de Oliveira, Jennifer Giandhari

published 26 Apr 2023

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