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Genome sequencing

A Metagenomic Analysis of Pandemic Influenza A (2009 H1N1) Infection in Patients from North America

Alexander L. Greninger, Eunice C. Chen, Taylor Sittler, Alex Scheinerman, Nareg Roubinian, Guixia Yu, Edward Kim, Dylan R. Pillai, Cyril Guyard, Tony Mazzulli, Pavel Isa, Carlos F. Arias, John Hackett Jr, Gerald Schochetman, Steve Miller, Patrick Tang, Charles Y. Chiu

published 18 Oct 2010

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Genome-Wide DNA Methylation Maps in Follicular Lymphoma Cells Determined by Methylation-Enriched Bisulfite Sequencing

Jeong-Hyeon Choi, Yajun Li, Juyuan Guo, Lirong Pei, Tibor A. Rauch, Robin S. Kramer, Simone L. Macmil, Graham B. Wiley, Lynda B. Bennett, Jennifer L. Schnabel, Kristen H. Taylor, Sun Kim, Dong Xu, Arun Sreekumar, Gerd P. Pfeifer, Bruce A. Roe, Charles W. Caldwell, Kapil N. Bhalla, Huidong Shi

published 29 Sep 2010

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Reference-Free Validation of Short Read Data

Jan Schröder, James Bailey, Thomas Conway, Justin Zobel

published 22 Sep 2010

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Occupancy Modeling, Maximum Contig Size Probabilities and Designing Metagenomics Experiments

Stephen A. Stanhope

published 29 Jul 2010

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Read Length and Repeat Resolution: Exploring Prokaryote Genomes Using Next-Generation Sequencing Technologies

Matt J. Cahill, Claudio U. Köser, Nicholas E. Ross, John A. C. Archer

published 12 Jul 2010

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Utilizing Genotype Imputation for the Augmentation of Sequence Data

Brooke L. Fridley, Gregory Jenkins, Matthew E. Deyo-Svendsen, Scott Hebbring, Robert Freimuth

published 08 Jun 2010

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De Novo Assembly of the Complete Genome of an Enhanced Electricity-Producing Variant of Geobacter sulfurreducens Using Only Short Reads

Harish Nagarajan, Jessica E. Butler, Anna Klimes, Yu Qiu, Karsten Zengler, Joy Ward, Nelson D. Young, Barbara A. Methé, Bernhard Ø. Palsson, Derek R. Lovley, Christian L. Barrett

published 08 Jun 2010

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Investigating the Epigenetic Effects of a Prototype Smoke-Derived Carcinogen in Human Cells

Stella Tommasi, Sang-in Kim, Xueyan Zhong, Xiwei Wu, Gerd P. Pfeifer, Ahmad Besaratinia

published 12 May 2010

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Whole Methylome Analysis by Ultra-Deep Sequencing Using Two-Base Encoding

Christina A. Bormann Chung, Victoria L. Boyd, Kevin J. McKernan, Yutao Fu, Cinna Monighetti, Heather E. Peckham, Melissa Barker

published 22 Feb 2010

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Analysis of High-Throughput Sequencing and Annotation Strategies for Phage Genomes

Matthew R. Henn, Matthew B. Sullivan, Nicole Stange-Thomann, Marcia S. Osburne, Aaron M. Berlin, Libusha Kelly, Chandri Yandava, Chinnappa Kodira, Qiandong Zeng, Michael Weiand, Todd Sparrow, Sakina Saif, Georgia Giannoukos, Sarah K. Young, Chad Nusbaum, Bruce W. Birren, Sallie W. Chisholm

published 05 Feb 2010

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The Feasibility of Using High Resolution Genome Sequencing of Influenza A Viruses to Detect Mixed Infections and Quasispecies

Muthannan A. Ramakrishnan, Zheng Jin Tu, Sushmita Singh, Ashok K. Chockalingam, Marie R. Gramer, Ping Wang, Sagar M. Goyal, My Yang, David A. Halvorson, Srinand Sreevatsan

published 22 Sep 2009

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Whole Genome Amplification and De novo Assembly of Single Bacterial Cells

Sébastien Rodrigue, Rex R. Malmstrom, Aaron M. Berlin, Bruce W. Birren, Matthew R. Henn, Sallie W. Chisholm

published 02 Sep 2009

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Detection of Genomic Variation by Selection of a 9 Mb DNA Region and High Throughput Sequencing

Sergey I. Nikolaev, Christian Iseli, Andrew J. Sharp, Daniel Robyr, Jacques Rougemont, Corinne Gehrig, Laurent Farinelli, Stylianos E. Antonarakis

published 17 Aug 2009

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