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Genome sequencing

Error and Error Mitigation in Low-Coverage Genome Assemblies

Melissa J. Hubisz, Michael F. Lin, Manolis Kellis, Adam Siepel

published 14 Feb 2011

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Performance of Microarray and Liquid Based Capture Methods for Target Enrichment for Massively Parallel Sequencing and SNP Discovery

Anna Kiialainen, Olof Karlberg, Annika Ahlford, Snaevar Sigurdsson, Kerstin Lindblad-Toh, Ann-Christine Syvänen

published 09 Feb 2011

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ReadDepth: A Parallel R Package for Detecting Copy Number Alterations from Short Sequencing Reads

Christopher A. Miller, Oliver Hampton, Cristian Coarfa, Aleksandar Milosavljevic

published 31 Jan 2011

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Large Scale Loss of Data in Low-Diversity Illumina Sequencing Libraries Can Be Recovered by Deferred Cluster Calling

Felix Krueger, Simon R. Andrews, Cameron S. Osborne

published 28 Jan 2011

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PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals

Robert Kofler, Pablo Orozco-terWengel, Nicola De Maio, Ram Vinay Pandey, Viola Nolte, Andreas Futschik, Carolin Kosiol, Christian Schlötterer

published 06 Jan 2011

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Mutation Detection with Next-Generation Resequencing through a Mediator Genome

Omri Wurtzel, Mally Dori-Bachash, Shmuel Pietrokovski, Edouard Jurkevitch, Rotem Sorek

published 31 Dec 2010

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Analysis of Ultra Low Genome Conservation in Clostridium difficile

Joy Scaria, Lalit Ponnala, Tavan Janvilisri, Weiwei Yan, Lukas A. Mueller, Yung-Fu Chang

published 08 Dec 2010

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Whole Genome Sequencing Highlights Genetic Changes Associated with Laboratory Domestication of C. elegans

Katherine P. Weber, Subhajyoti De, Iwanka Kozarewa, Daniel J. Turner, M. Madan Babu, Mario de Bono

published 11 Nov 2010

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Development of a Low Bias Method for Characterizing Viral Populations Using Next Generation Sequencing Technology

Stephanie M. Willerth, Hélder A. M. Pedro, Lior Pachter, Laurent M. Humeau, Adam P. Arkin, David V. Schaffer

published 22 Oct 2010

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A Metagenomic Analysis of Pandemic Influenza A (2009 H1N1) Infection in Patients from North America

Alexander L. Greninger, Eunice C. Chen, Taylor Sittler, Alex Scheinerman, Nareg Roubinian, Guixia Yu, Edward Kim, Dylan R. Pillai, Cyril Guyard, Tony Mazzulli, Pavel Isa, Carlos F. Arias, John Hackett Jr, Gerald Schochetman, Steve Miller, Patrick Tang, Charles Y. Chiu

published 18 Oct 2010

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Genome-Wide DNA Methylation Maps in Follicular Lymphoma Cells Determined by Methylation-Enriched Bisulfite Sequencing

Jeong-Hyeon Choi, Yajun Li, Juyuan Guo, Lirong Pei, Tibor A. Rauch, Robin S. Kramer, Simone L. Macmil, Graham B. Wiley, Lynda B. Bennett, Jennifer L. Schnabel, Kristen H. Taylor, Sun Kim, Dong Xu, Arun Sreekumar, Gerd P. Pfeifer, Bruce A. Roe, Charles W. Caldwell, Kapil N. Bhalla, Huidong Shi

published 29 Sep 2010

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Reference-Free Validation of Short Read Data

Jan Schröder, James Bailey, Thomas Conway, Justin Zobel

published 22 Sep 2010

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Occupancy Modeling, Maximum Contig Size Probabilities and Designing Metagenomics Experiments

Stephen A. Stanhope

published 29 Jul 2010

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