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Genome sequencing

Error and Error Mitigation in Low-Coverage Genome Assemblies

Melissa J. Hubisz, Michael F. Lin, Manolis Kellis, Adam Siepel

Performance of Microarray and Liquid Based Capture Methods for Target Enrichment for Massively Parallel Sequencing and SNP Discovery

Anna Kiialainen, Olof Karlberg, [ ... ], Ann-Christine Syvänen

ReadDepth: A Parallel R Package for Detecting Copy Number Alterations from Short Sequencing Reads

Christopher A. Miller, Oliver Hampton, Cristian Coarfa, Aleksandar Milosavljevic

Large Scale Loss of Data in Low-Diversity Illumina Sequencing Libraries Can Be Recovered by Deferred Cluster Calling

Felix Krueger, Simon R. Andrews, Cameron S. Osborne

PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals

Robert Kofler, Pablo Orozco-terWengel, [ ... ], Christian Schlötterer

Mutation Detection with Next-Generation Resequencing through a Mediator Genome

Omri Wurtzel, Mally Dori-Bachash, [ ... ], Rotem Sorek

Analysis of Ultra Low Genome Conservation in Clostridium difficile

Joy Scaria, Lalit Ponnala, [ ... ], Yung-Fu Chang

Whole Genome Sequencing Highlights Genetic Changes Associated with Laboratory Domestication of C. elegans

Katherine P. Weber, Subhajyoti De, [ ... ], Mario de Bono

Development of a Low Bias Method for Characterizing Viral Populations Using Next Generation Sequencing Technology

Stephanie M. Willerth, Hélder A. M. Pedro, [ ... ], David V. Schaffer

A Metagenomic Analysis of Pandemic Influenza A (2009 H1N1) Infection in Patients from North America

Alexander L. Greninger, Eunice C. Chen, [ ... ], Charles Y. Chiu

Genome-Wide DNA Methylation Maps in Follicular Lymphoma Cells Determined by Methylation-Enriched Bisulfite Sequencing

Jeong-Hyeon Choi, Yajun Li, [ ... ], Huidong Shi

Reference-Free Validation of Short Read Data

Jan Schröder, James Bailey, Thomas Conway, Justin Zobel

Occupancy Modeling, Maximum Contig Size Probabilities and Designing Metagenomics Experiments

Stephen A. Stanhope

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