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Genome sequencing

A Metagenomic Analysis of Pandemic Influenza A (2009 H1N1) Infection in Patients from North America

Alexander L. Greninger, Eunice C. Chen, [ ... ], Charles Y. Chiu

Genome-Wide DNA Methylation Maps in Follicular Lymphoma Cells Determined by Methylation-Enriched Bisulfite Sequencing

Jeong-Hyeon Choi, Yajun Li, [ ... ], Huidong Shi

Reference-Free Validation of Short Read Data

Jan Schröder, James Bailey, Thomas Conway, Justin Zobel

Occupancy Modeling, Maximum Contig Size Probabilities and Designing Metagenomics Experiments

Stephen A. Stanhope

Read Length and Repeat Resolution: Exploring Prokaryote Genomes Using Next-Generation Sequencing Technologies

Matt J. Cahill, Claudio U. Köser, Nicholas E. Ross, John A. C. Archer

Utilizing Genotype Imputation for the Augmentation of Sequence Data

Brooke L. Fridley, Gregory Jenkins, [ ... ], Robert Freimuth

De Novo Assembly of the Complete Genome of an Enhanced Electricity-Producing Variant of Geobacter sulfurreducens Using Only Short Reads

Harish Nagarajan, Jessica E. Butler, [ ... ], Christian L. Barrett

Investigating the Epigenetic Effects of a Prototype Smoke-Derived Carcinogen in Human Cells

Stella Tommasi, Sang-in Kim, [ ... ], Ahmad Besaratinia

Whole Methylome Analysis by Ultra-Deep Sequencing Using Two-Base Encoding

Christina A. Bormann Chung, Victoria L. Boyd, [ ... ], Melissa Barker

Analysis of High-Throughput Sequencing and Annotation Strategies for Phage Genomes

Matthew R. Henn, Matthew B. Sullivan, [ ... ], Sallie W. Chisholm

The Feasibility of Using High Resolution Genome Sequencing of Influenza A Viruses to Detect Mixed Infections and Quasispecies

Muthannan A. Ramakrishnan, Zheng Jin Tu, [ ... ], Srinand Sreevatsan

Whole Genome Amplification and De novo Assembly of Single Bacterial Cells

Sébastien Rodrigue, Rex R. Malmstrom, [ ... ], Sallie W. Chisholm

Detection of Genomic Variation by Selection of a 9 Mb DNA Region and High Throughput Sequencing

Sergey I. Nikolaev, Christian Iseli, [ ... ], Stylianos E. Antonarakis

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