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Genome sequencing

Exploring the Zoonotic Potential of Mycobacterium avium Subspecies paratuberculosis through Comparative Genomics

James W. Wynne, Tim J. Bull, Torsten Seemann, Dieter M. Bulach, Josef Wagner, Carl D. Kirkwood, Wojtek P. Michalski

published 22 Jul 2011

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Prospective Genomic Characterization of the German Enterohemorrhagic Escherichia coli O104:H4 Outbreak by Rapid Next Generation Sequencing Technology

Alexander Mellmann, Dag Harmsen, Craig A. Cummings, Emily B. Zentz, Shana R. Leopold, Alain Rico, Karola Prior, Rafael Szczepanowski, Yongmei Ji, Wenlan Zhang, Stephen F. McLaughlin, John K. Henkhaus, Benjamin Leopold, Martina Bielaszewska, Rita Prager, Pius M. Brzoska, Richard L. Moore, Simone Guenther, Jonathan M. Rothberg, Helge Karch

published 20 Jul 2011

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An Effective Method to Purify Plasmodium falciparum DNA Directly from Clinical Blood Samples for Whole Genome High-Throughput Sequencing

Sarah Auburn, Susana Campino, Taane G. Clark, Abdoulaye A. Djimde, Issaka Zongo, Robert Pinches, Magnus Manske, Valentina Mangano, Daniel Alcock, Elisa Anastasi, Gareth Maslen, Bronwyn MacInnis, Kirk Rockett, David Modiano, Christopher I. Newbold, Ogobara K. Doumbo, Jean Bosco Ouédraogo, Dominic P. Kwiatkowski

published 18 Jul 2011

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Exome Sequencing Reveals Comprehensive Genomic Alterations across Eight Cancer Cell Lines

Han Chang, Donald G. Jackson, Paul S. Kayne, Petra B. Ross-Macdonald, Rolf-Peter Ryseck, Nathan O. Siemers

published 20 Jun 2011

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Statistical Quantification of Methylation Levels by Next-Generation Sequencing

Guodong Wu, Nengjun Yi, Devin Absher, Degui Zhi

published 15 Jun 2011

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Comparison of Sequence Reads Obtained from Three Next-Generation Sequencing Platforms

Shingo Suzuki, Naoaki Ono, Chikara Furusawa, Bei-Wen Ying, Tetsuya Yomo

published 17 May 2011

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Comparing De Novo Genome Assembly: The Long and Short of It

Giuseppe Narzisi, Bud Mishra

published 29 Apr 2011

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A Comprehensive Deep Sequencing Strategy for Full-Length Genomes of Influenza A

Dirk Höper, Bernd Hoffmann, Martin Beer

published 29 Apr 2011

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Genome Sequencing and Analysis of Yersina pestis KIM D27, an Avirulent Strain Exempt from Select Agent Regulation

Liliana Losada, John J. Varga, Jessica Hostetler, Diana Radune, Maria Kim, Scott Durkin, Olaf Schneewind, William C. Nierman

published 29 Apr 2011

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Comparison of Three Targeted Enrichment Strategies on the SOLiD Sequencing Platform

Dale J. Hedges, Toumy Guettouche, Shan Yang, Guney Bademci, Ashley Diaz, Ashley Andersen, William F. Hulme, Sara Linker, Arpit Mehta, Yvonne J. K. Edwards, Gary W. Beecham, Eden R. Martin, Margaret A. Pericak-Vance, Stephan Zuchner, Jeffery M. Vance, John R. Gilbert

published 29 Apr 2011

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Single Cell Genome Amplification Accelerates Identification of the Apratoxin Biosynthetic Pathway from a Complex Microbial Assemblage

Rashel V. Grindberg, Thomas Ishoey, Dumitru Brinza, Eduardo Esquenazi, R. Cameron Coates, Wei-ting Liu, Lena Gerwick, Pieter C. Dorrestein, Pavel Pevzner, Roger Lasken, William H. Gerwick

published 12 Apr 2011

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Single Virus Genomics: A New Tool for Virus Discovery

Lisa Zeigler Allen, Thomas Ishoey, Mark A. Novotny, Jeffrey S. McLean, Roger S. Lasken, Shannon J. Williamson

published 23 Mar 2011

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Conserved PCR Primer Set Designing for Closely-Related Species to Complete Mitochondrial Genome Sequencing Using a Sliding Window-Based PSO Algorithm

Cheng-Hong Yang, Hsueh-Wei Chang, Chang-Hsuan Ho, Yii-Cheng Chou, Li-Yeh Chuang

published 18 Mar 2011

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