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Genome sequencing

Use of Low-Coverage, Large-Insert, Short-Read Data for Rapid and Accurate Generation of Enhanced-Quality Draft Pseudomonas Genome Sequences

Heath E. O'Brien, Yunchen Gong, Pauline Fung, Pauline W. Wang, David S. Guttman

published 02 Nov 2011

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An Evaluation of Different Target Enrichment Methods in Pooled Sequencing Designs for Complex Disease Association Studies

Aaron G. Day-Williams, Kirsten McLay, Eleanor Drury, Sarah Edkins, Alison J. Coffey, Aarno Palotie, Eleftheria Zeggini

published 01 Nov 2011

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ConDeTri - A Content Dependent Read Trimmer for Illumina Data

Linnéa Smeds, Axel Künstner

published 19 Oct 2011

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Whole Genome Sequencing and Evolutionary Analysis of Human Respiratory Syncytial Virus A and B from Milwaukee, WI 1998-2010

Cecilia Rebuffo-Scheer, Michael Bose, Jie He, Shamim Khaja, Michael Ulatowski, Eric T. Beck, Jiang Fan, Swati Kumar, Martha I. Nelson, Kelly J. Henrickson

published 06 Oct 2011

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Rapid Genotyping of Soybean Cultivars Using High Throughput Sequencing

Kranthi Varala, Kankshita Swaminathan, Ying Li, Matthew E. Hudson

published 20 Sep 2011

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Evaluation of Methods for De Novo Genome Assembly from High-Throughput Sequencing Reads Reveals Dependencies That Affect the Quality of the Results

Niina Haiminen, David N. Kuhn, Laxmi Parida, Isidore Rigoutsos

published 07 Sep 2011

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LOCAS – A Low Coverage Assembly Tool for Resequencing Projects

Juliane D. Klein, Stephan Ossowski, Korbinian Schneeberger, Detlef Weigel, Daniel H. Huson

published 15 Aug 2011

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Design Considerations for Massively Parallel Sequencing Studies of Complex Human Disease

Bing-Jian Feng, Sean V. Tavtigian, Melissa C. Southey, David E. Goldgar

published 05 Aug 2011

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Structural Alterations from Multiple Displacement Amplification of a Human Genome Revealed by Mate-Pair Sequencing

Xiang Jiao, Magnus Rosenlund, Sean D. Hooper, Christian Tellgren-Roth, Liqun He, Yutao Fu, Jonathan Mangion, Tobias Sjöblom

published 22 Jul 2011

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Exploring the Zoonotic Potential of Mycobacterium avium Subspecies paratuberculosis through Comparative Genomics

James W. Wynne, Tim J. Bull, Torsten Seemann, Dieter M. Bulach, Josef Wagner, Carl D. Kirkwood, Wojtek P. Michalski

published 22 Jul 2011

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Prospective Genomic Characterization of the German Enterohemorrhagic Escherichia coli O104:H4 Outbreak by Rapid Next Generation Sequencing Technology

Alexander Mellmann, Dag Harmsen, Craig A. Cummings, Emily B. Zentz, Shana R. Leopold, Alain Rico, Karola Prior, Rafael Szczepanowski, Yongmei Ji, Wenlan Zhang, Stephen F. McLaughlin, John K. Henkhaus, Benjamin Leopold, Martina Bielaszewska, Rita Prager, Pius M. Brzoska, Richard L. Moore, Simone Guenther, Jonathan M. Rothberg, Helge Karch

published 20 Jul 2011

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An Effective Method to Purify Plasmodium falciparum DNA Directly from Clinical Blood Samples for Whole Genome High-Throughput Sequencing

Sarah Auburn, Susana Campino, Taane G. Clark, Abdoulaye A. Djimde, Issaka Zongo, Robert Pinches, Magnus Manske, Valentina Mangano, Daniel Alcock, Elisa Anastasi, Gareth Maslen, Bronwyn MacInnis, Kirk Rockett, David Modiano, Christopher I. Newbold, Ogobara K. Doumbo, Jean Bosco Ouédraogo, Dominic P. Kwiatkowski

published 18 Jul 2011

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Exome Sequencing Reveals Comprehensive Genomic Alterations across Eight Cancer Cell Lines

Han Chang, Donald G. Jackson, Paul S. Kayne, Petra B. Ross-Macdonald, Rolf-Peter Ryseck, Nathan O. Siemers

published 20 Jun 2011

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