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Genome sequencing

Sequencing of Treponema pallidum subsp. pallidum from isolate UZ1974 using Anti-Treponemal Antibodies Enrichment: First complete whole genome sequence obtained directly from human clinical material

Linda Grillová, Lorenzo Giacani, [ ... ], David Šmajs

Choice of library preparation affects sequence quality, genome assembly, and precise in silico prediction of virulence genes in shiga toxin-producing Escherichia coli

Julie Haendiges, Karen Jinneman, Narjol Gonzalez-Escalona

Investigating hospital Mycobacterium chelonae infection using whole genome sequencing and hybrid assembly

Christopher H. Gu, Chunyu Zhao, [ ... ], Frederic D. Bushman

On the core bacterial flora of Ixodes persulcatus (Taiga tick)

Shuo Sui, Yu Yang, [ ... ], Jun Yu

Whole-genome based strain identification of fowlpox virus directly from cutaneous tissue and propagated virus

Kinza Asif, Denise O’Rourke, [ ... ], Amir H. Noormohammadi

A hepatitis B virus (HBV) sequence variation graph improves alignment and sample-specific consensus sequence construction

Dylan Duchen, Steven J. Clipman, [ ... ], Genevieve L. Wojcik

Advancing clinical cohort selection with genomics analysis on a distributed platform

Jaclyn M. Smith, Melvin Lathara, [ ... ], Christopher T. Denny

Improving the Power of Structural Variation Detection by Augmenting the Reference

Jan Schröder, Santhosh Girirajan, Anthony T. Papenfuss, Paul Medvedev

Molecular epidemiology of SARS-CoV-2 in Cyprus

Jan Richter, Pavlos Fanis, [ ... ], Christina Christodoulou

Optimized conditions for Listeria, Salmonella and Escherichia whole genome sequencing using the Illumina iSeq100 platform with point-and-click bioinformatic analysis

Sonsiray Alvarez Narvaez, Zhenyu Shen, [ ... ], Susan Sanchez

Hypervirulent group A Streptococcus emergence in an acaspular background is associated with marked remodeling of the bacterial cell surface

Jessica Galloway-Peña, Sruti DebRoy, [ ... ], Samuel A. Shelburne

Method for isolation of high molecular weight genomic DNA from Botryococcus biomass

Ivette Cornejo-Corona, Devon J. Boland, Timothy P. Devarenne

Rapid genotyping of targeted viral samples using Illumina short-read sequencing data

Alex Váradi, Eszter Kaszab, [ ... ], Levente Laczkó

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