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Genome sequencing

SNP Discovery with EST and NextGen Sequencing in Switchgrass (Panicum virgatum L.)

Elhan S. Ersoz, Mark H. Wright, [ ... ], Denise E. Costich

In-Depth Investigation of Archival and Prospectively Collected Samples Reveals No Evidence for XMRV Infection in Prostate Cancer

Deanna Lee, Jaydip Das Gupta, [ ... ], Charles Y. Chiu

An Integrated Pipeline for de Novo Assembly of Microbial Genomes

Andrew Tritt, Jonathan A. Eisen, Marc T. Facciotti, Aaron E. Darling

Genetic Characterisation of Malawian Pneumococci Prior to the Roll-Out of the PCV13 Vaccine Using a High-Throughput Whole Genome Sequencing Approach

Dean B. Everett, Jennifer Cornick, [ ... ], Stephen D. Bentley

Genometa - A Fast and Accurate Classifier for Short Metagenomic Shotgun Reads

Colin F. Davenport, Jens Neugebauer, [ ... ], Frauke Sprengel

An Improved Protocol for Sequencing of Repetitive Genomic Regions and Structural Variations Using Mutagenesis and Next Generation Sequencing

Botond Sipos, Tim Massingham, Adrian M. Stütz, Nick Goldman

SNP Discovery Using Next Generation Transcriptomic Sequencing in Atlantic Herring (Clupea harengus)

Sarah J. Helyar, Morten T. Limborg, [ ... ], Frank Panitz

The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins

Tongwu Zhang, Songnian Hu, [ ... ], Jun Yu

Empirical Validation of Pooled Whole Genome Population Re-Sequencing in Drosophila melanogaster

Yuan Zhu, Alan O. Bergland, Josefa González, Dmitri A. Petrov

The “Most Wanted” Taxa from the Human Microbiome for Whole Genome Sequencing

Anthony A. Fodor, Todd Z. DeSantis, [ ... ], Ashlee M. Earl

Advanced Methylome Analysis after Bisulfite Deep Sequencing: An Example in Arabidopsis

Huy Q. Dinh, Manu Dubin, [ ... ], Arndt von Haeseler

Consensus Rules in Variant Detection from Next-Generation Sequencing Data

Peilin Jia, Fei Li, [ ... ], Zhongming Zhao

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

Brant K. Peterson, Jesse N. Weber, [ ... ], Hopi E. Hoekstra

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