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Genome sequencing

In-Depth Investigation of Archival and Prospectively Collected Samples Reveals No Evidence for XMRV Infection in Prostate Cancer

Deanna Lee, Jaydip Das Gupta, Christina Gaughan, Imke Steffen, Ning Tang, Ka-Cheung Luk, Xiaoxing Qiu, Anatoly Urisman, Nicole Fischer, Ross Molinaro, Miranda Broz, Gerald Schochetman, Eric A. Klein, Don Ganem, Joseph L. DeRisi, Graham Simmons, John Hackett Jr, Robert H. Silverman, Charles Y. Chiu

published 18 Sep 2012

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An Integrated Pipeline for de Novo Assembly of Microbial Genomes

Andrew Tritt, Jonathan A. Eisen, Marc T. Facciotti, Aaron E. Darling

published 13 Sep 2012

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Genetic Characterisation of Malawian Pneumococci Prior to the Roll-Out of the PCV13 Vaccine Using a High-Throughput Whole Genome Sequencing Approach

Dean B. Everett, Jennifer Cornick, Brigitte Denis, Claire Chewapreecha, Nicholas Croucher, Simon Harris, Julian Parkhill, Stephen Gordon, Enitan D. Carrol, Neil French, Robert S. Heyderman, Stephen D. Bentley

published 10 Sep 2012

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Genometa - A Fast and Accurate Classifier for Short Metagenomic Shotgun Reads

Colin F. Davenport, Jens Neugebauer, Nils Beckmann, Benedikt Friedrich, Burim Kameri, Svea Kokott, Malte Paetow, Björn Siekmann, Matthias Wieding-Drewes, Markus Wienhöfer, Stefan Wolf, Burkhard Tümmler, Volker Ahlers, Frauke Sprengel

published 21 Aug 2012

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An Improved Protocol for Sequencing of Repetitive Genomic Regions and Structural Variations Using Mutagenesis and Next Generation Sequencing

Botond Sipos, Tim Massingham, Adrian M. Stütz, Nick Goldman

published 17 Aug 2012

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SNP Discovery Using Next Generation Transcriptomic Sequencing in Atlantic Herring (Clupea harengus)

Sarah J. Helyar, Morten T. Limborg, Dorte Bekkevold, Massimiliano Babbucci, Jeroen van Houdt, Gregory E. Maes, Luca Bargelloni, Rasmus O. Nielsen, Martin I. Taylor, Rob Ogden, Alessia Cariani, Gary R. Carvalho, FishPopTrace Consortium, Frank Panitz

published 07 Aug 2012

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The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins

Tongwu Zhang, Songnian Hu, Guangyu Zhang, Linlin Pan, Xiaowei Zhang, Ibrahim S. Al-Mssallem, Jun Yu

published 31 Jul 2012

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Empirical Validation of Pooled Whole Genome Population Re-Sequencing in Drosophila melanogaster

Yuan Zhu, Alan O. Bergland, Josefa González, Dmitri A. Petrov

published 26 Jul 2012

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The “Most Wanted” Taxa from the Human Microbiome for Whole Genome Sequencing

Anthony A. Fodor, Todd Z. DeSantis, Kristine M. Wylie, Jonathan H. Badger, Yuzhen Ye, Theresa Hepburn, Ping Hu, Erica Sodergren, Konstantinos Liolios, Heather Huot-Creasy, Bruce W. Birren, Ashlee M. Earl

published 26 Jul 2012

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Advanced Methylome Analysis after Bisulfite Deep Sequencing: An Example in Arabidopsis

Huy Q. Dinh, Manu Dubin, Fritz J. Sedlazeck, Nicole Lettner, Ortrun Mittelsten Scheid, Arndt von Haeseler

published 20 Jul 2012

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Consensus Rules in Variant Detection from Next-Generation Sequencing Data

Peilin Jia, Fei Li, Jufeng Xia, Haiquan Chen, Hongbin Ji, William Pao, Zhongming Zhao

published 08 Jun 2012

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Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

Brant K. Peterson, Jesse N. Weber, Emily H. Kay, Heidi S. Fisher, Hopi E. Hoekstra

published 31 May 2012

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Artificial Polyploidy Improves Bacterial Single Cell Genome Recovery

Armand E. K. Dichosa, Michael S. Fitzsimons, Chien-Chi Lo, Lea L. Weston, Lara G. Preteska, Jeremy P. Snook, Xiaojing Zhang, Wei Gu, Kim McMurry, Lance D. Green, Patrick S. Chain, J. Chris Detter, Cliff S. Han

published 22 May 2012

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