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Genome sequencing

The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation

Konstantinos Mavromatis, Miriam L. Land, [ ... ], Nikos C. Kyrpides

Discovery of a hapE Mutation That Causes Azole Resistance in Aspergillus fumigatus through Whole Genome Sequencing and Sexual Crossing

Simone M. T. Camps, Bas E. Dutilh, [ ... ], Willem J. G. Melchers

A Comparison of the Whole Genome Approach of MeDIP-Seq to the Targeted Approach of the Infinium HumanMethylation450 BeadChip^® for Methylome Profiling

Christine Clark, Priit Palta, [ ... ], Alison J. Coffey

Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology

Adam C. English, Stephen Richards, [ ... ], Richard A. Gibbs

Generation of Artificial FASTQ Files to Evaluate the Performance of Next-Generation Sequencing Pipelines

Matthew Frampton, Richard Houlston

LDx: Estimation of Linkage Disequilibrium from High-Throughput Pooled Resequencing Data

Alison F. Feder, Dmitri A. Petrov, Alan O. Bergland

A Streamlined Method for Detecting Structural Variants in Cancer Genomes by Short Read Paired-End Sequencing

Martina Mijušković, Stuart M. Brown, [ ... ], David B. Roth

COPS: A Sensitive and Accurate Tool for Detecting Somatic Copy Number Alterations Using Short-Read Sequence Data from Paired Samples

Neeraja M. Krishnan, Prakhar Gaur, [ ... ], Binay Panda

Detecting Identity by Descent and Homozygosity Mapping in Whole-Exome Sequencing Data

Zhong Zhuang, Alexander Gusev, Judy Cho, Itsik Pe'er

Improving PacBio Long Read Accuracy by Short Read Alignment

Kin Fai Au, Jason G. Underwood, Lawrence Lee, Wing Hung Wong

Long Span DNA Paired-End-Tag (DNA-PET) Sequencing Strategy for the Interrogation of Genomic Structural Mutations and Fusion-Point-Guided Reconstruction of Amplicons

Fei Yao, Pramila N. Ariyaratne, [ ... ], Yijun Ruan

Paired-End Sequencing of Long-Range DNA Fragments for De Novo Assembly of Large, Complex Mammalian Genomes by Direct Intra-Molecule Ligation

Asan, Chunyu Geng, [ ... ], Xiuqing Zhang

Prolonged and Substantial Discordance in Prevalence of Raltegravir-Resistant HIV-1 in Plasma versus PBMC Samples Revealed by 454 “Deep” Sequencing

Guinevere Q. Lee, Luke C. Swenson, [ ... ], P. Richard Harrigan

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