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Genome sequencing

A Single Cell Level Based Method for Copy Number Variation Analysis by Low Coverage Massively Parallel Sequencing

Chunlei Zhang, Chunsheng Zhang, Shengpei Chen, Xuyang Yin, Xiaoyu Pan, Ge Lin, Yueqiu Tan, Ke Tan, Zhengfeng Xu, Ping Hu, Xuchao Li, Fang Chen, Xun Xu, Yingrui Li, Xiuqing Zhang, Hui Jiang, Wei Wang

published 23 Jan 2013

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Effective Preparation of Plasmodium vivax Field Isolates for High-Throughput Whole Genome Sequencing

Sarah Auburn, Jutta Marfurt, Gareth Maslen, Susana Campino, Valentin Ruano Rubio, Magnus Manske, Barbara MacHunter, Enny Kenangalem, Rintis Noviyanti, Leily Trianty, Boni Sebayang, Grennady Wirjanata, Kanlaya Sriprawat, Daniel Alcock, Bronwyn MacInnis, Olivo Miotto, Taane G. Clark, Bruce Russell, Nicholas M. Anstey, François Nosten, Dominic P. Kwiatkowski, Ric N. Price

published 04 Jan 2013

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Significance of the Identification in the Horn of Africa of an Exceptionally Deep Branching Mycobacterium tuberculosis Clade

Yann Blouin, Yolande Hauck, Charles Soler, Michel Fabre, Rithy Vong, Céline Dehan, Géraldine Cazajous, Pierre-Laurent Massoure, Philippe Kraemer, Akinbowale Jenkins, Eric Garnotel, Christine Pourcel, Gilles Vergnaud

published 27 Dec 2012

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Semi-Automatic In Silico Gap Closure Enabled De Novo Assembly of Two Dehalobacter Genomes from Metagenomic Data

Shuiquan Tang, Yunchen Gong, Elizabeth A. Edwards

published 21 Dec 2012

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HTS-PEG: A Method for High Throughput Sequencing of the Paired-Ends of Genomic Libraries

Sisi Zhou, Yonggui Fu, Jie Li, Lingyu He, Xingsheng Cai, Qingyu Yan, Xingqiang Rao, Shengfeng Huang, Guang Li, Yiquan Wang, Anlong Xu

published 20 Dec 2012

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FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads

Haibin Xu, Xiang Luo, Jun Qian, Xiaohui Pang, Jingyuan Song, Guangrui Qian, Jinhui Chen, Shilin Chen

published 20 Dec 2012

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Estimation of Copy Number Alterations from Exome Sequencing Data

Rafael Valdés-Mas, Silvia Bea, Diana A. Puente, Carlos López-Otín, Xose S. Puente

published 19 Dec 2012

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Conveniently Pre-Tagged and Pre-Packaged: Extended Molecular Identification and Metagenomics Using Complete Metazoan Mitochondrial Genomes

Agnes Dettai, Cyril Gallut, Sophie Brouillet, Joel Pothier, Guillaume Lecointre, Régis Debruyne

published 14 Dec 2012

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The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation

Konstantinos Mavromatis, Miriam L. Land, Thomas S. Brettin, Daniel J. Quest, Alex Copeland, Alicia Clum, Lynne Goodwin, Tanja Woyke, Alla Lapidus, Hans Peter Klenk, Robert W. Cottingham, Nikos C. Kyrpides

published 12 Dec 2012

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Discovery of a hapE Mutation That Causes Azole Resistance in Aspergillus fumigatus through Whole Genome Sequencing and Sexual Crossing

Simone M. T. Camps, Bas E. Dutilh, Maiken C. Arendrup, Antonius J. M. M. Rijs, Eveline Snelders, Martijn A. Huynen, Paul E. Verweij, Willem J. G. Melchers

published 30 Nov 2012

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A Comparison of the Whole Genome Approach of MeDIP-Seq to the Targeted Approach of the Infinium HumanMethylation450 BeadChip^® for Methylome Profiling

Christine Clark, Priit Palta, Christopher J. Joyce, Carol Scott, Elin Grundberg, Panos Deloukas, Aarno Palotie, Alison J. Coffey

published 29 Nov 2012

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Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology

Adam C. English, Stephen Richards, Yi Han, Min Wang, Vanesa Vee, Jiaxin Qu, Xiang Qin, Donna M. Muzny, Jeffrey G. Reid, Kim C. Worley, Richard A. Gibbs

published 21 Nov 2012

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Generation of Artificial FASTQ Files to Evaluate the Performance of Next-Generation Sequencing Pipelines

Matthew Frampton, Richard Houlston

published 12 Nov 2012

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