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Genome sequencing

Whole genome sequencing of Clostridioides difficile PCR ribotype 046 suggests transmission between pigs and humans

Anders Werner, Paula Mölling, [ ... ], Torbjörn Norén

Molecular epidemiology of cattle tuberculosis in Mexico through whole-genome sequencing and spoligotyping

Claudia Angélica Perea Razo, Elba Rodríguez Hernández, [ ... ], Germinal Jorge Cantó Alarcón

RAMBO-K: Rapid and Sensitive Removal of Background Sequences from Next Generation Sequencing Data

Simon H. Tausch, Bernhard Y. Renard, Andreas Nitsche, Piotr Wojciech Dabrowski

Investigation of Pseudomonas aeruginosa strain PcyII-10 variants resisting infection by N4-like phage Ab09 in search for genes involved in phage adsorption

Libera Latino, Cédric Midoux, Gilles Vergnaud, Christine Pourcel

A short plus long-amplicon based sequencing approach improves genomic coverage and variant detection in the SARS-CoV-2 genome

Carlos Arana, Chaoying Liang, [ ... ], Prithvi Raj

SVvalidation: A long-read-based validation method for genomic structural variation

Yan Zheng, Xuequn Shang

Chromosome-scale genome sequence assemblies of the ‘Autumn Bliss’ and ‘Malling Jewel’ cultivars of the highly heterozygous red raspberry (Rubus idaeus L.) derived from long-read Oxford Nanopore sequence data

R. Jordan Price, Jahn Davik, [ ... ], Daniel James Sargent

Characterization of genetic changes associated with daptomycin nonsusceptibility in Staphylococcus aureus

Zhuo Ma, Erica Lasek-Nesselquist, [ ... ], Meenakshi Malik

Robustness of Massively Parallel Sequencing Platforms

Pınar Kavak, Bayram Yüksel, [ ... ], Mahmut Şamil Sağıroğlu

Whole genome sequencing identifies novel structural variant in a large Indian family affected with X-linked agammaglobulinemia

Abhinav Jain, Geeta Madathil Govindaraj, [ ... ], Vinod Scaria

Needs Assessment for Research Use of High-Throughput Sequencing at a Large Academic Medical Center

Albert Geskin, Elizabeth Legowski, [ ... ], Rebecca S. Jacobson

Identification and Molecular Characterisation of a Novel Mu-Like Bacteriophage, SfMu, of Shigella flexneri

Richa Jakhetia, Naresh K. Verma

A Simple Strategy for Reducing False Negatives in Calling Variants from Single-Cell Sequencing Data

Cong Ji, Zong Miao, Xionglei He

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