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Genome sequencing

A hepatitis B virus (HBV) sequence variation graph improves alignment and sample-specific consensus sequence construction

Dylan Duchen, Steven J. Clipman, Candelaria Vergara, Chloe L. Thio, David L. Thomas, Priya Duggal, Genevieve L. Wojcik

published 26 Apr 2024

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Full genome sequence analysis of African swine fever virus isolates from Cameroon

Lynnette C. Goatley, Graham Freimanis, Chandana Tennakoon, Thomas J. Foster, Mehnaz Quershi, Linda K. Dixon, Carrie Batten, Jan Hendrik Forth, Abel Wade, Christopher Netherton

published 21 Mar 2024

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Impact of genetic background as a risk factor for atherosclerotic cardiovascular disease: A protocol for a nationwide genetic case-control (CV-GENES) study in Brazil

Haliton Alves de Oliveira Junior, Precil Diego Miranda de Menezes Neves, Gustavo Bernardes de Figueiredo Oliveira, Frederico Rafael Moreira, Maria Carolina Tostes Pintão, Viviane Zorzanelli Rocha, Cristiane de Souza Rocha, Viviane Nakano Katz, Elisa Napolitano Ferreira, Diana Rojas-Málaga, Celso Ferraz Viana, Fabiula Fagundes da Silva, Juliete Jorge Vidotti, Natalia Mariana Felicio, Leticia de Araújo Vitor, Karina Gimenez Cesar, Camila Araújo da Silva, Lucas Bassolli de Oliveira Alves, Álvaro Avezum

published 13 Mar 2024

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A target enrichment approach for enhanced recovery of Synchytrium endobioticum nuclear genome sequences

Hai D. T. Nguyen, Ekaterina Ponomareva, Kasia Dadej, Donna Smith, Melissa Antoun, Theo A. J. van der Lee, Bart T. L. H. van de Vossenberg

published 12 Feb 2024

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Extraction and selection of high-molecular-weight DNA for long-read sequencing from Chlamydomonas reinhardtii

Frédéric Chaux, Nicolas Agier, Stephan Eberhard, Zhou Xu

published 08 Feb 2024

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Transcriptome sequencing and screening of genes related to the MADS-box gene family in Clematis courtoisii

Mingjian Chen, Linfang Li, Shu’an Wang, Peng Wang, Ya Li

published 05 Feb 2024

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Kuura—An automated workflow for analyzing WES and WGS data

Dhanaprakash Jambulingam, Venkat Subramaniam Rathinakannan, Samuel Heron, Johanna Schleutker, Vidal Fey

published 18 Jan 2024

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SVvalidation: A long-read-based validation method for genomic structural variation

Yan Zheng, Xuequn Shang

published 05 Jan 2024

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Rapid and collective determination of the complete “hot-spring frog” mitochondrial genome containing long repeat regions using Nanopore sequencing

Yuka Asaeda, Kento Shiraga, Makoto Suzuki, Yoshihiro Sambongi, Hajime Ogino, Takeshi Igawa

published 31 Oct 2023

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Complete genome assembly of Hawai’i environmental nontuberculous mycobacteria reveals unexpected co-isolation with methylobacteria

Jo Hendrix, L. Elaine Epperson, Eric I. Tong, Yvonne L. Chan, Nabeeh A. Hasan, Stephanie N. Dawrs, Grant J. Norton, Ravleen Virdi, James L. Crooks, Edward D. Chan, Jennifer R. Honda, Michael Strong

published 13 Sep 2023

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From chip to SNP: Rapid development and evaluation of a targeted capture genotyping-by-sequencing approach to support research and management of a plaguing rodent

Kevin P. Oh, Nikki Van de Weyer, Wendy A. Ruscoe, Steve Henry, Peter R. Brown

published 17 Aug 2023

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Evaluation of an optimized germline exomes pipeline using BWA-MEM2 and Dragen-GATK tools

Nofe Alganmi, Heba Abusamra

published 03 Aug 2023

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Antigen concentration, viral load, and test performance for SARS-CoV-2 in multiple specimen types

Allison Golden, Michelle Oliveira-Silva, Hannah Slater, Alexia Martines Vieira, Pooja Bansil, Emily Gerth-Guyette, Brandon T. Leader, Stephanie Zobrist, Alan Kennedy Braga Ferreira, Erika Crhistina Santos de Araujo, Catherine Duran de Lucena Cruz, Eduardo Garbin, Greg T. Bizilj, Sean J. Carlson, Mariana Sagalovsky, Sampa Pal, Vin Gupta, Leo Wolansky, David S. Boyle, Deusilene Souza Vieira Dall’Acqua, Felipe Gomes Naveca, Valdinete Alves do Nascimento, Juan Miguel Villalobos Salcedo, Paul K. Drain, Alexandre Dias Tavares Costa, Dhélio Pereira, Gonzalo J. Domingo

published 19 Jul 2023

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