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Genome sequencing

Efficient wastewater sample filtration improves the detection of SARS-CoV-2 variants: An extensive analysis based on sequencing parameters

Angelo Robotto, Carlotta Olivero, Elisa Pozzi, Claudia Strumia, Camilla Crasà, Cristina Fedele, Maddalena Derosa, Massimo Di Martino, Stefania Latino, Giada Scorza, Andrea Civra, David Lembo, Paola Quaglino, Enrico Brizio, Denis Polato

published 24 May 2024

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SARS-CoV-2 variant introduction following spring break travel and transmission mitigation strategies

Justin M. Napolitano, Sujata Srikanth, Rooksana E. Noorai, Stevin Wilson, Kaitlyn E. Williams, Ramses A. Rosales-Garcia, Brian Krueger, Chloe Emerson, Scott Parker, John Pruitt, Rachel Dango, Lax Iyer, Adib Shafi, Iromi Jayawardena, Christopher L. Parkinson, Christopher McMahan, Lior Rennert, Congyue Annie Peng, Delphine Dean

published 09 May 2024

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A hepatitis B virus (HBV) sequence variation graph improves alignment and sample-specific consensus sequence construction

Dylan Duchen, Steven J. Clipman, Candelaria Vergara, Chloe L. Thio, David L. Thomas, Priya Duggal, Genevieve L. Wojcik

published 26 Apr 2024

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Full genome sequence analysis of African swine fever virus isolates from Cameroon

Lynnette C. Goatley, Graham Freimanis, Chandana Tennakoon, Thomas J. Foster, Mehnaz Quershi, Linda K. Dixon, Carrie Batten, Jan Hendrik Forth, Abel Wade, Christopher Netherton

published 21 Mar 2024

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Impact of genetic background as a risk factor for atherosclerotic cardiovascular disease: A protocol for a nationwide genetic case-control (CV-GENES) study in Brazil

Haliton Alves de Oliveira Junior, Precil Diego Miranda de Menezes Neves, Gustavo Bernardes de Figueiredo Oliveira, Frederico Rafael Moreira, Maria Carolina Tostes Pintão, Viviane Zorzanelli Rocha, Cristiane de Souza Rocha, Viviane Nakano Katz, Elisa Napolitano Ferreira, Diana Rojas-Málaga, Celso Ferraz Viana, Fabiula Fagundes da Silva, Juliete Jorge Vidotti, Natalia Mariana Felicio, Leticia de Araújo Vitor, Karina Gimenez Cesar, Camila Araújo da Silva, Lucas Bassolli de Oliveira Alves, Álvaro Avezum

published 13 Mar 2024

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A target enrichment approach for enhanced recovery of Synchytrium endobioticum nuclear genome sequences

Hai D. T. Nguyen, Ekaterina Ponomareva, Kasia Dadej, Donna Smith, Melissa Antoun, Theo A. J. van der Lee, Bart T. L. H. van de Vossenberg

published 12 Feb 2024

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Extraction and selection of high-molecular-weight DNA for long-read sequencing from Chlamydomonas reinhardtii

Frédéric Chaux, Nicolas Agier, Stephan Eberhard, Zhou Xu

published 08 Feb 2024

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Transcriptome sequencing and screening of genes related to the MADS-box gene family in Clematis courtoisii

Mingjian Chen, Linfang Li, Shu’an Wang, Peng Wang, Ya Li

published 05 Feb 2024

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Kuura—An automated workflow for analyzing WES and WGS data

Dhanaprakash Jambulingam, Venkat Subramaniam Rathinakannan, Samuel Heron, Johanna Schleutker, Vidal Fey

published 18 Jan 2024

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SVvalidation: A long-read-based validation method for genomic structural variation

Yan Zheng, Xuequn Shang

published 05 Jan 2024

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Reduced representation approaches produce similar results to whole genome sequencing for some common phylogeographic analyses

Drew J. Duckett, Kailee Calder, Jack Sullivan, David C. Tank, Bryan C. Carstens

published 30 Nov 2023

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Rapid and collective determination of the complete “hot-spring frog” mitochondrial genome containing long repeat regions using Nanopore sequencing

Yuka Asaeda, Kento Shiraga, Makoto Suzuki, Yoshihiro Sambongi, Hajime Ogino, Takeshi Igawa

published 31 Oct 2023

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Complete genome assembly of Hawai’i environmental nontuberculous mycobacteria reveals unexpected co-isolation with methylobacteria

Jo Hendrix, L. Elaine Epperson, Eric I. Tong, Yvonne L. Chan, Nabeeh A. Hasan, Stephanie N. Dawrs, Grant J. Norton, Ravleen Virdi, James L. Crooks, Edward D. Chan, Jennifer R. Honda, Michael Strong

published 13 Sep 2023

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