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Genome sequencing

Avidity sequencing of whole genomes from retinal degeneration pedigrees identifies causal variants

Pooja Biswas, Adda Villanueva, Benjamin J. Krajacich, Juan Moreno, Junhua Zhao, Anne Marie Berry, Danielle Lazaro, Bryan R. Lajoie, Semyon Kruglyak, Radha Ayyagari

published 04 Oct 2024

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Validated DNA isolation method ensuring successful long-read sequencing of cattle semen genome

Erwan Denis, Cécile Grohs, Cécile Donnadieu, Carole Iampietro

published 07 Aug 2024

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Variant calling and genotyping accuracy of ddRAD-seq: Comparison with 20X WGS in layers

Mathilde Doublet, Fabien Degalez, Sandrine Lagarrigue, Laetitia Lagoutte, Elise Gueret, Sophie Allais, Frédéric Lecerf

published 26 Jul 2024

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Method for isolation of high molecular weight genomic DNA from Botryococcus biomass

Ivette Cornejo-Corona, Devon J. Boland, Timothy P. Devarenne

published 24 Jul 2024

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Avirulence of a spontaneous Francisella tularensis subsp. mediasiatica prmA mutant

Vitalii Timofeev, Irina Bakhteeva, Galina Titareva, Raisa Mironova, Vera Evseeva, Tatiana Kravchenko, Angelika Sizova, Alexander Borzilov, Natalia Pavlovich, Alexander Mokrievich, Ivan Dyatlov, Gilles Vergnaud

published 18 Jun 2024

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Exploring the potential of Oxford Nanopore Technologies sequencing for Mycobacterium tuberculosis sequencing: An assessment of R10 flowcells and V14 chemistry

Anzaan Dippenaar, Emilyn Costa Conceição, Felicia Wells, Johannes Loubser, Brendon Mann, Miguel De Diego Fuertes, Vincent Rennie, Robin Mark Warren, Annelies Van Rie

published 06 Jun 2024

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Efficient wastewater sample filtration improves the detection of SARS-CoV-2 variants: An extensive analysis based on sequencing parameters

Angelo Robotto, Carlotta Olivero, Elisa Pozzi, Claudia Strumia, Camilla Crasà, Cristina Fedele, Maddalena Derosa, Massimo Di Martino, Stefania Latino, Giada Scorza, Andrea Civra, David Lembo, Paola Quaglino, Enrico Brizio, Denis Polato

published 24 May 2024

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SARS-CoV-2 variant introduction following spring break travel and transmission mitigation strategies

Justin M. Napolitano, Sujata Srikanth, Rooksana E. Noorai, Stevin Wilson, Kaitlyn E. Williams, Ramses A. Rosales-Garcia, Brian Krueger, Chloe Emerson, Scott Parker, John Pruitt, Rachel Dango, Lax Iyer, Adib Shafi, Iromi Jayawardena, Christopher L. Parkinson, Christopher McMahan, Lior Rennert, Congyue Annie Peng, Delphine Dean

published 09 May 2024

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A hepatitis B virus (HBV) sequence variation graph improves alignment and sample-specific consensus sequence construction

Dylan Duchen, Steven J. Clipman, Candelaria Vergara, Chloe L. Thio, David L. Thomas, Priya Duggal, Genevieve L. Wojcik

published 26 Apr 2024

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Full genome sequence analysis of African swine fever virus isolates from Cameroon

Lynnette C. Goatley, Graham Freimanis, Chandana Tennakoon, Thomas J. Foster, Mehnaz Quershi, Linda K. Dixon, Carrie Batten, Jan Hendrik Forth, Abel Wade, Christopher Netherton

published 21 Mar 2024

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Impact of genetic background as a risk factor for atherosclerotic cardiovascular disease: A protocol for a nationwide genetic case-control (CV-GENES) study in Brazil

Haliton Alves de Oliveira Junior, Precil Diego Miranda de Menezes Neves, Gustavo Bernardes de Figueiredo Oliveira, Frederico Rafael Moreira, Maria Carolina Tostes Pintão, Viviane Zorzanelli Rocha, Cristiane de Souza Rocha, Viviane Nakano Katz, Elisa Napolitano Ferreira, Diana Rojas-Málaga, Celso Ferraz Viana, Fabiula Fagundes da Silva, Juliete Jorge Vidotti, Natalia Mariana Felicio, Leticia de Araújo Vitor, Karina Gimenez Cesar, Camila Araújo da Silva, Lucas Bassolli de Oliveira Alves, Álvaro Avezum

published 13 Mar 2024

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A target enrichment approach for enhanced recovery of Synchytrium endobioticum nuclear genome sequences

Hai D. T. Nguyen, Ekaterina Ponomareva, Kasia Dadej, Donna Smith, Melissa Antoun, Theo A. J. van der Lee, Bart T. L. H. van de Vossenberg

published 12 Feb 2024

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Extraction and selection of high-molecular-weight DNA for long-read sequencing from Chlamydomonas reinhardtii

Frédéric Chaux, Nicolas Agier, Stephan Eberhard, Zhou Xu

published 08 Feb 2024

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