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Genome sequencing

Comparison of sequential multiplex PCR, sequetyping and whole genome sequencing for serotyping of Streptococcus pneumoniae

Florian Mauffrey, Éric Fournier, [ ... ], Brigitte Lefebvre

Whole genome sequencing characterization of Slovenian carbapenem-resistant Klebsiella pneumoniae, including OXA-48 and NDM-1 producing outbreak isolates

Katarina Benulič, Mateja Pirš, [ ... ], Tjaša Cerar

Isolation and Characterization of Two Novel Bacteria Afipia cberi and Mesorhizobium hominis from Blood of a Patient Afflicted with Fatal Pulmonary Illness

Shyh-Ching Lo, Bingjie Li, [ ... ], Ludmilla Olesnicky

Identifying Likely Transmission Pathways within a 10-Year Community Outbreak of Tuberculosis by High-Depth Whole Genome Sequencing

Alexander C. Outhred, Nadine Holmes, [ ... ], Vitali Sintchenko

Experimental Evolution of Mycobacterium tuberculosis in Human Macrophages Results in Low-Frequency Mutations Not Associated with Selective Advantage

Valentina Guerrini, Selvakumar Subbian, [ ... ], Gianni Pozzi

A haplotype-phased genome of wheat stripe rust pathogen Puccinia striiformis f. sp. tritici, race PST-130 from the Western USA

Hans Vasquez-Gross, Sukhwinder Kaur, Lynn Epstein, Jorge Dubcovsky

SRComp: Short Read Sequence Compression Using Burstsort and Elias Omega Coding

Jeremy John Selva, Xin Chen

Rapid Identification of a Novel Complex I MT-ND3 m.10134C>A Mutation in a Leigh Syndrome Patient

David K. Miller, Minal J. Menezes, [ ... ], Ryan J. Taft

Prolonged and Substantial Discordance in Prevalence of Raltegravir-Resistant HIV-1 in Plasma versus PBMC Samples Revealed by 454 “Deep” Sequencing

Guinevere Q. Lee, Luke C. Swenson, [ ... ], P. Richard Harrigan

A Monte Carlo Permutation Test for Random Mating Using Genome Sequences

Ran Li, Minxian Wang, Li Jin, Yungang He

De Novo Occurrence of a Variant in ARL3 and Apparent Autosomal Dominant Transmission of Retinitis Pigmentosa

Samuel P. Strom, Michael J. Clark, [ ... ], Michael B. Gorin

The major satellite DNA families of the diploid Chenopodium album aggregate species: Arguments for and against the “library hypothesis”

Alexander Belyayev, Michaela Jandová, [ ... ], Karol Krak

A database of simulated tumor genomes towards accurate detection of somatic small variants in cancer

Jing Meng, Yi-Ping Phoebe Chen

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