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Genome sequencing

Next generation sequencing reveals the antibiotic resistant variants in the genome of Pseudomonas aeruginosa

Babu Ramanathan, Hassan Mahmood Jindal, Cheng Foh Le, Ranganath Gudimella, Arif Anwar, Rozaimi Razali, Johan Poole-Johnson, Rishya Manikam, Shamala Devi Sekaran

published 10 Aug 2017

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Comparison of alternative approaches for analysing multi-level RNA-seq data

Irina Mohorianu, Amanda Bretman, Damian T. Smith, Emily K. Fowler, Tamas Dalmay, Tracey Chapman

published 08 Aug 2017

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CAM: A quality control pipeline for MNase-seq data

Sheng’en Hu, Xiaolan Chen, Ji Liao, Yiqing Chen, Chengchen Zhao, Yong Zhang

published 07 Aug 2017

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Whole genome sequence of the Treponema pallidum subsp. pallidum strain Amoy: An Asian isolate highly similar to SS14

Man-Li Tong, Qiang Zhao, Li-Li Liu, Xiao-Zhen Zhu, Kun Gao, Hui-Lin Zhang, Li-Rong Lin, Jian-Jun Niu, Zhi-Liang Ji, Tian-Ci Yang

published 07 Aug 2017

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NS3 genomic sequencing and phylogenetic analysis as alternative to a commercially available assay to reliably determine hepatitis C virus subtypes 1a and 1b

Karin Neukam, Alfredo P. Martínez, Andrés C. A. Culasso, Ezequiel Ridruejo, Gabriel García, Federico A. Di Lello

published 28 Jul 2017

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Resequencing and variation identification of whole genome of the japonica rice variety "Longdao24" with high yield

Shukun Jiang, Shichen Sun, Liangming Bai, Guohua Ding, Tongtong Wang, Tianshu Xia, Hui Jiang, Xijuan Zhang, Fengming Zhang

published 17 Jul 2017

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Evaluating whole genome sequence data from the Genetic Absence Epilepsy Rat from Strasbourg and its related non-epileptic strain

Pablo M. Casillas-Espinosa, Kim L. Powell, Mingfu Zhu, C. Ryan Campbell, Jessica M. Maia, Zhong Ren, Nigel C. Jones, Terence J. O’Brien, Slavé Petrovski

published 14 Jul 2017

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On the core bacterial flora of Ixodes persulcatus (Taiga tick)

Shuo Sui, Yu Yang, Yi Sun, Xumin Wang, Guoliang Wang, Guangle Shan, Jiancheng Wang, Jun Yu

published 10 Jul 2017

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Myotis rufoniger genome sequence and analyses: M. rufoniger’s genomic feature and the decreasing effective population size of Myotis bats

Youngjune Bhak, Yeonsu Jeon, Sungwon Jeon, Oksung Chung, Sungwoong Jho, JeHoon Jun, Hak-Min Kim, Yongsoo Cho, Changhan Yoon, Seungwoo Lee, Jung-Hoon Kang, Jong-Deock Lim, Junghwa An, Yun Sung Cho, Doug-Young Ryu, Jong Bhak

published 05 Jul 2017

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Clinical genome sequencing and population preferences for information about ‘incidental’ findings—From medically actionable genes (MAGs) to patient actionable genes (PAGs)

Thomas Ploug, Søren Holm

published 03 Jul 2017

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Optimized double-digest genotyping by sequencing (ddGBS) method with high-density SNP markers and high genotyping accuracy for chickens

Yuzhe Wang, Xuemin Cao, Yiqiang Zhao, Jing Fei, Xiaoxiang Hu, Ning Li

published 09 Jun 2017

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Development and evaluation of a core genome multilocus typing scheme for whole-genome sequence-based typing of Acinetobacter baumannii

Paul G. Higgins, Karola Prior, Dag Harmsen, Harald Seifert

published 08 Jun 2017

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Comprehensive bioinformatics analysis of Mycoplasma pneumoniae genomes to investigate underlying population structure and type-specific determinants

Maureen H. Diaz, Heta P. Desai, Shatavia S. Morrison, Alvaro J. Benitez, Bernard J. Wolff, Jason Caravas, Timothy D. Read, Deborah Dean, Jonas M. Winchell

published 14 Apr 2017

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