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Genome sequencing

Characterization of genetic changes associated with daptomycin nonsusceptibility in Staphylococcus aureus

Zhuo Ma, Erica Lasek-Nesselquist, Jackson Lu, Ryan Schneider, Riddhi Shah, George Oliva, Janice Pata, Kathleen McDonough, Manjunath P. Pai, Warren E. Rose, George Sakoulas, Meenakshi Malik

published 07 Jun 2018

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The complete chloroplast genome sequence of Actinidia arguta using the PacBio RS II platform

Miaomiao Lin, Xiujuan Qi, Jinyong Chen, Leiming Sun, Yunpeng Zhong, Jinbao Fang, Chungen Hu

published 24 May 2018

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Massively parallel sequencing of micro-manipulated cells targeting a comprehensive panel of disease-causing genes: A comparative evaluation of upstream whole-genome amplification methods

Lieselot Deleye, Yannick Gansemans, Dieter De Coninck, Filip Van Nieuwerburgh, Dieter Deforce

published 26 Apr 2018

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A framework for the estimation of the proportion of true discoveries in single nucleotide variant detection studies for human data

Nik Tuzov

published 25 Apr 2018

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Xome-Blender: A novel cancer genome simulator

Roberto Semeraro, Valerio Orlandini, Alberto Magi

published 05 Apr 2018

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Early MinION^™ nanopore single-molecule sequencing technology enables the characterization of hepatitis B virus genetic complexity in clinical samples

Virginie Sauvage, Laure Boizeau, Daniel Candotti, Mathias Vandenbogaert, Annabelle Servant-Delmas, Valérie Caro, Syria Laperche

published 22 Mar 2018

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Artificial selection increased body weight but induced increase of runs of homozygosity in Hanwoo cattle

Kwondo Kim, Jaehoon Jung, Kelsey Caetano-Anollés, Samsun Sung, DongAhn Yoo, Bong-Hwan Choi, Hyung-Chul Kim, Jin-Young Jeong, Yong-Min Cho, Eung-Woo Park, Tae-Jeong Choi, Byoungho Park, Dajeong Lim, Heebal Kim

published 21 Mar 2018

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Whole genome bisulfite sequencing reveals unique adaptations to high-altitude environments in Tibetan chickens

Zengrong Zhang, Huarui Du, Lijun Bai, Chaowu Yang, Qingyun Li, Xiaocheng Li, Mohan Qiu, Chunlin Yu, Zongrong Jiang, Xiaoyu Jiang, Lan Liu, Chenming Hu, Bo Xia, Xia Xiong, Xiaoyan Song, Xiaosong Jiang

published 21 Mar 2018

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High-resolution detection of chromosomal rearrangements in leukemias through mate pair whole genome sequencing

Anh Nhi Tran, Fulya Taylan, Vasilios Zachariadis, Ingegerd Ivanov Öfverholm, Anna Lindstrand, Francesco Vezzi, Britta Lötstedt, Magnus Nordenskjöld, Ann Nordgren, Daniel Nilsson, Gisela Barbany

published 12 Mar 2018

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Facilitated sequence assembly using densely labeled optical DNA barcodes: A combinatorial auction approach

Albertas Dvirnas, Christoffer Pichler, Callum L. Stewart, Saair Quaderi, Lena K. Nyberg, Vilhelm Müller, Santosh Kumar Bikkarolla, Erik Kristiansson, Linus Sandegren, Fredrik Westerlund, Tobias Ambjörnsson

published 09 Mar 2018

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Probiotic and anti-inflammatory potential of Lactobacillus rhamnosus 4B15 and Lactobacillus gasseri 4M13 isolated from infant feces

Nam Su Oh, Jae Yeon Joung, Ji Young Lee, Younghoon Kim

published 14 Feb 2018

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ViroFind: A novel target-enrichment deep-sequencing platform reveals a complex JC virus population in the brain of PML patients

Spyros Chalkias, Joshua M. Gorham, Erica Mazaika, Michael Parfenov, Xin Dang, Steve DePalma, David McKean, Christine E. Seidman, Jonathan G. Seidman, Igor J. Koralnik

published 23 Jan 2018

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Hybrid genome assembly and annotation of Paenibacillus pasadenensis strain R16 reveals insights on endophytic life style and antifungal activity

Alessandro Passera, Luca Marcolungo, Paola Casati, Milena Brasca, Fabio Quaglino, Chiara Cantaloni, Massimo Delledonne

published 19 Jan 2018

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