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Genome sequencing

Hypervirulent group A Streptococcus emergence in an acaspular background is associated with marked remodeling of the bacterial cell surface

Jessica Galloway-Peña, Sruti DebRoy, Chelcy Brumlow, Xiqi Li, Truc T. Tran, Nicola Horstmann, Hui Yao, Ken Chen, Fang Wang, Bih-Fang Pan, David H. Hawke, Erika J. Thompson, Cesar A. Arias, Vance G. Fowler Jr., Micah M. Bhatti, Awdhesh Kalia, Anthony R. Flores, Samuel A. Shelburne

published 05 Dec 2018

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AFLP-AFLP in silico-NGS approach reveals polymorphisms in repetitive elements in the malignant genome

Jitka Koblihova, Klara Srutova, Monika Krutska, Hana Klamova, Katerina Machova Polakova

published 08 Nov 2018

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Determination of the presence of 5-methylcytosine in Paramecium tetraurelia

Aditi Singh, Adrienne Vancura, Rafal K. Woycicki, Daniel J. Hogan, Alan G. Hendrick, Mariusz Nowacki

published 31 Oct 2018

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Health professionals' and researchers' perspectives on prenatal whole genome and exome sequencing: 'We can't shut the door now, the genie's out, we need to refine it'

Ruth Horn, Michael Parker

published 21 Sep 2018

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Whole genome sequencing of Neisseria meningitidis W isolates from the Czech Republic recovered in 1984–2017

Michal Honskus, Zuzana Okonji, Martin Musilek, Jana Kozakova, Pavla Krizova

published 13 Sep 2018

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Identifying genetic diversity of O antigens in Aeromonas hydrophila for molecular serotype detection

Hengchun Cao, Min Wang, Qian Wang, Tingting Xu, Yuhui Du, Huiying Li, Chengqian Qian, Zhiqiu Yin, Lu Wang, Yi Wei, Pan Wu, Xi Guo, Bin Yang, Bin Liu

published 05 Sep 2018

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A database of simulated tumor genomes towards accurate detection of somatic small variants in cancer

Jing Meng, Yi-Ping Phoebe Chen

published 30 Aug 2018

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Molecular epidemiology of cattle tuberculosis in Mexico through whole-genome sequencing and spoligotyping

Claudia Angélica Perea Razo, Elba Rodríguez Hernández, Sergio Iván Román Ponce, Feliciano Milián Suazo, Suelee Robbe-Austerman, Tod Stuber, Germinal Jorge Cantó Alarcón

published 23 Aug 2018

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Sequencing of Treponema pallidum subsp. pallidum from isolate UZ1974 using Anti-Treponemal Antibodies Enrichment: First complete whole genome sequence obtained directly from human clinical material

Linda Grillová, Lorenzo Giacani, Lenka Mikalová, Michal Strouhal, Radim Strnadel, Christina Marra, Arturo Centurion-Lara, Lucy Poveda, Giancarlo Russo, Darina Čejková, Vladimír Vašků, Jan Oppelt, David Šmajs

published 21 Aug 2018

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iMapSplice: Alleviating reference bias through personalized RNA-seq alignment

Xinan Liu, James N. MacLeod, Jinze Liu

published 10 Aug 2018

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Assessment of willingness to pay for expanded carrier screening among women and couples undergoing preconception carrier screening

Elizabeth V. Clarke, Jennifer L. Schneider, Frances Lynch, Tia L. Kauffman, Michael C. Leo, Ana G. Rosales, John F. Dickerson, Elizabeth Shuster, Benjamin S. Wilfond, Katrina A. B. Goddard

published 18 Jul 2018

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Analytical “bake-off” of whole genome sequencing quality for the Genome Russia project using a small cohort for autoimmune hepatitis

Daria V. Zhernakova, Sergei Kliver, Nikolay Cherkasov, Gaik Tamazian, Mikhail Rotkevich, Ksenia Krasheninnikova, Igor Evsyukov, Sviatoslav Sidorov, Pavel Dobrynin, Andrey A. Yurchenko, Valentin Shimansky, Irina V. Shcherbakova, Andrey S. Glotov, David L. Valle, Minzhong Tang, Emilia Shin, Kathleen B. Schwarz, Stephen J. O'Brien

published 11 Jul 2018

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An optimized methodology for whole genome sequencing of RNA respiratory viruses from nasopharyngeal aspirates

Stephanie Goya, Laura E. Valinotto, Estefania Tittarelli, Gabriel L. Rojo, Mercedes S. Nabaes Jodar, Alexander L. Greninger, Jonathan J. Zaiat, Marcelo A. Marti, Alicia S. Mistchenko, Mariana Viegas

published 25 Jun 2018

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