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Genome analysis

Revisiting co-expression-based automated function prediction in yeast with neural networks and updated Gene Ontology annotations

Cole E. McGuire, Matthew A. Hibbs

published 16 Apr 2026

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Exploration of schizophrenia-associated gene modules using graph theory, co-expression networks, and dimensionality reduction

Costas Bampos, Vasileios Megalooikonomou

published 15 Apr 2026

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Bioinformatics analysis and qRT-PCR validation of iron metabolism-related genes in pediatric asthma

Liang Liu, Yingying Sun, Yu Wang, Xiaofei Xie, Lina Wei

published 15 Apr 2026

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Stage-specific screening reveals differential resilience response to cold stress in rice

Fahamida Akter, Partha S. Biswas, Abul Kalam Mohammad Aminul Islam, Mohammad Sharif Raihan, Md. Mizanur Rahman, Khandakar Md. Iftekharuddaula, Mohammad Rafiqul Islam, John Damien Platten

published 15 Apr 2026

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Impact of SETD8/KMT5A overexpression on hepatocellular carcinoma progression and prognosis

Norihiko Suzaki, Shinya Hayami, Atsushi Miyamoto, Masashi Nakamura, Tomohiro Yoshimura, Kensuke Nakamura, Yoshinobu Shigekawa, Atsushi Shimizu, Yuji Kitahata, Akihiro Takeuchi, Hideki Motobayashi, Shigehiro Osada, Shogo Ehata, Ryuji Hamamoto, Manabu Kawai

published 13 Apr 2026

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Genomic dissection of methane emission traits in cattle: A meta-GWAS and heritability analysis across populations

Sare Golpasand, Navid Ghavi Hossein-Zadeh, Shahrokh Ghovvati

published 10 Apr 2026

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Whole genome and phylogenomic insights into Vibrio parahaemolyticus from Pacific White Shrimp reveal resistance and virulence traits in Bangladeshi aquaculture

Md. Habib Ullah Masum, Mohammad Sharif Uddin, Kazi Chamonara, Sumaia Sultana, Sajedul Islam, Afifa Siddiqua

published 09 Apr 2026

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Protocol: A multi-factorial, multi-centre study, for biomarker identification in healthy controls for comparison to babies with moderate-severe NESHIE

Carina C. Babbo, Jeanne van Rensburg, Juanita Mellet, Sithembiso C. Velaphi, Firdose L. Nakwa, Mogomane Y.K. Masemola, Gugulabatembunamahlubi T.J. Kali, Caroline J. Foden, Solize Oosthuizen-Vosloo, Vedarsha Chellan, Odireleng Mosuwe, Priyal Mistry, Ariel R.M. Buyens, Fatima Barmania, Shakti Pillay, Daynia E. Ballot, Melantha Coetzee, Alan R. Horn, Colleen Wright, Pawel T. Schubertand, Michael S. Pepper

published 08 Apr 2026

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Leveraging a synthetic biology approach to enhance BCG-mediated expansion of Vγ9Vδ2 T cells

Christine M. Qabar, Allison W. Roberts, Lucas M. Waldburger, Edward E. K. Baidoo, Emine Akyuz Turumtay, Jay D. Keasling, Dan A. Portnoy, Jeffery S. Cox

published 06 Apr 2026

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GermVarX: A Robust Workflow for Joint Germline Variant Exploration in whole-exome sequencing cohorts

Thao Thi Phuong Nguyen, Dung Duc Nguyen, Thuy Van Mai, Dung Khoi Nguyen, Tung Dang Nguyen, Ngoc Thi Minh Truong, Hanh Hong Ha, Trang Thi Ha Tran

published 02 Apr 2026

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Analysis of morphological, morphokinetics, cell-free DNA, microRNAs parameters to predict aneuploidy status of embryos

Achmad Kemal Harzif, Intan Indah Permatasari, Patricia Alika Kurniawan, Thalia Amila Elsiyana, Fistyanisa Elya Charilda, Azizah Fitriayu Andyra, Heidi Dewi Mutia, Nafi’atul Ummah, Putri Nurbaeti, Amalia Shadrina, Pritta Ameilia Iffanolida, Kresna Mutia, Ririn Rahmala Febri, Retno Asti Werdhani, Dwi Anita Suryandari, Wisnu Jatmiko, Arief Boediono, Hartanto Bayuaji, R. Muharam Natadisastra, Budi Wiweko

published 02 Apr 2026

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Hepatic transcriptomic responses in gravid and non-gravid rats exposed to HFPO-DA: Analyses to inform the role of maternal effects in neonatal toxicity

Melissa M. Heintz, Chad M. Thompson, Jeffrey C. Wolf, John M. Rogers, Laurie C. Haws

published 01 Apr 2026

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Integrated transcriptome and single-cell sequencing analysis identify blood-pancreas shared lncRNA biomarkers in new-onset T2DM

Yan Wang, Yangming Qu, Mingxin Dong, Yulong Zhang, Na Zhao, Suli Song, Mingyang Huo, Nan Lu, Baichuan Chen, Chengbiao Sun, Kaikai Yu, Juan Ren, Na Xu, Wensen Liu, Yan Yao

published 31 Mar 2026

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