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Genome analysis

Centriflaken: An automated data analysis pipeline for assembly and in silico analyses of foodborne pathogens from metagenomic samples

Kranti Konganti, Julie A. Kase, Narjol Gonzalez-Escalona

published 23 Dec 2025

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Co-isolation of genetically distinct Burkholderia pseudomallei strains from a single patient in North Queensland

Pauline M. L. Coulon, Piklu Roy Chowdhury, Ian Gassiep, Kay Ramsay, Aven Lee, Edita Ritmejeryte, Miranda E. Pitt, Joyce To, Sarah Reed, Patrick N. A. Harris, Garry S. A. Myers

published 18 Dec 2025

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Single-cell RNA-seq data normalization: A benchmarking study

Qinyu Ge, Yuqi Sheng, Junru Lu, Yuwei Yang, Min Pan

published 18 Dec 2025

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Genomic and enzymatic insights into α-amylase-producing Bacillus spizizenii strains isolated from Isfahan province, Iran

Batoul Al Sharif, Mohammad Mehdi Golchini, Aboozar Soorni, Rahim Mehrabi

published 18 Dec 2025

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Novel adomaviruses associated with blotchy bass syndrome in black basses (Micropterus spp.)

Luke R. Iwanowicz, Clayton D. Raines, Kelsey T. Young, Vicki S. Blazer, Heather L. Walsh, Geoff Smith, Cynthia Holt, John Odenkirk, Tom Jones, Jan-Michael Hessenauer, Morgan A. Biggs, Christopher B. Buck, Justin Greer, R. Scott Cornman

published 17 Dec 2025

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Whole-genome analysis of Lysinibacillus boronitolerans MSR1: A dairy-isolated multidrug-resistant and non-pathogenic strain

Md. Shahedur Rahman, Md. Tofidul Islam, Mahadi Hasan, Md. Tariquzzaman, Nure Sharaf Nower Samia, Md. Mahfuzur Rahman, Mustafizur Rahman

published 12 Dec 2025

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Identification of transposable elements and satellite DNA in the Neotropical species Drosophila amaguana from the Ecuadorian Andean Forests

Manuel Alejandro Coba-Males, Simon Orozco-Arias, Romain Guyot, Doris Vela

published 10 Dec 2025

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Computation suggests that the cell adhesion sub-proteome is enriched for sites of pH-dependence and charge burial

Shalaw Sallah, Jim Warwicker

published 09 Dec 2025

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Association between Anti-Helicobacter pylori IgG seropositivity on coronary heart disease and potential pathogenesis: a Mendelian randomization study

Jing Wang, Tianying Chang, Yiqiang Wang, Jinling Zhang, Rui Chen, Le Liu, Yingzi Cui, Hongguang Jin

published 09 Dec 2025

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Chloroplast genome analysis and phylogenetic position of Polygonatum sinopubescens and comparison with related species

Zhong-Mei Mo, Chun-Mou Wei, Hai-Ying Yu, Chuan-Dong Yang

published 05 Dec 2025

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Co-regulation of microglial subgroups in Alzheimer’s amyloid pathology: Implications for diagnosis and drug development

Yu Zhou, Yukuan Huang, Yangchang Fan, Feng Xue

published 05 Dec 2025

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Neisseria meningitidis serogroup B causing invasive disease, Italy, 2010–2021

Paola Vacca, Fenicia Vescio, Fortunato D’Ancona, Cecilia Fazio, Arianna Neri, Anna Carannante, Luigina Ambrosio, Florigio Romano Lista, Silvia Fillo, Andrea Ciammaruconi, Antonella Fortunato, Paola Stefanelli

published 05 Dec 2025

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Beyond accuracy: Quantifying the reliability of multiple instance learning for whole slide image classification

Hassan Keshvarikhojasteh, Marc Aubreville, Christof A. Bertram, Josien P. W. Pluim, Mitko Veta

published 05 Dec 2025

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