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Fungal evolution

Majority Rules with Random Tie-Breaking in Boolean Gene Regulatory Networks

Claudine Chaouiya, Ouerdia Ourrad, Ricardo Lima

Yeast “Make-Accumulate-Consume” Life Strategy Evolved as a Multi-Step Process That Predates the Whole Genome Duplication

Arne Hagman, Torbjörn Säll, Concetta Compagno, Jure Piskur

Evolution of the Toxins Muscarine and Psilocybin in a Family of Mushroom-Forming Fungi

Pawel Kosentka, Sarah L. Sprague, [ ... ], P. Brandon Matheny

Evolution of Smooth Tubercle Bacilli PE and PE_PGRS Genes: Evidence for a Prominent Role of Recombination and Imprint of Positive Selection

Amine Namouchi, Anis Karboul, [ ... ], Helmi Mardassi

Mechanisms of Intron Loss and Gain in the Fission Yeast Schizosaccharomyces

Tao Zhu, Deng-Ke Niu

Multiple Interkingdom Horizontal Gene Transfers in Pyrenophora and Closely Related Species and Their Contributions to Phytopathogenic Lifestyles

Bao-Fa Sun, Jin-Hua Xiao, [ ... ], Da-Wei Huang

The Evolutionary Dynamics of Protein-Protein Interaction Networks Inferred from the Reconstruction of Ancient Networks

Yuliang Jin, Dmitrij Turaev, [ ... ], Hernán A. Makse

Variability in the Insect and Plant Adhesins, Mad1 and Mad2, within the Fungal Genus Metarhizium Suggest Plant Adaptation as an Evolutionary Force

Michael Wyrebek, Michael J. Bidochka

Splicing-Related Features of Introns Serve to Propel Evolution

Yuping Luo, Chun Li, [ ... ], Siguang Li

The Impact of Gene Duplication, Insertion, Deletion, Lateral Gene Transfer and Sequencing Error on Orthology Inference: A Simulation Study

Daniel A. Dalquen, Adrian M. Altenhoff, Gaston H. Gonnet, Christophe Dessimoz

Iteratively Refined Guide Trees Help Improving Alignment and Phylogenetic Inference in the Mushroom Family Bolbitiaceae

Annamária Tóth, Anton Hausknecht, [ ... ], László G. Nagy

Dynamics of Adaptation in Spatially Heterogeneous Metapopulations

Julien Papaïx, Olivier David, Christian Lannou, Hervé Monod

The Mitochondrial Fission Adaptors Caf4 and Mdv1 Are Not Functionally Equivalent

Qian Guo, Sajjan Koirala, [ ... ], Janet M. Shaw

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