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Functional genomics

Functionally-focused algorithmic analysis of high resolution microarray-CGH genomic landscapes demonstrates comparable genomic copy number aberrations in MSI and MSS sporadic colorectal cancer

Hamad Ali, Milad S. Bitar, Ashraf Al Madhoun, Makia Marafie, Fahd Al-Mulla

published 23 Feb 2017

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De Novo Sequencing and Comparative Analysis of Schima superba Seedlings to Explore the Response to Drought Stress

Bao-cai Han, Wei Wei, Xiang-cheng Mi, Ke-ping Ma

published 08 Dec 2016

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Identification of Binding Targets of a Pyrrole-Imidazole Polyamide KR12 in the LS180 Colorectal Cancer Genome

Jason Lin, Kiriko Hiraoka, Takayoshi Watanabe, Tony Kuo, Yoshinao Shinozaki, Atsushi Takatori, Nobuko Koshikawa, Anandhakumar Chandran, Joe Otsuki, Hiroshi Sugiyama, Paul Horton, Hiroki Nagase

published 31 Oct 2016

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Complete Sequence and Analysis of Coconut Palm (Cocos nucifera) Mitochondrial Genome

Hasan Awad Aljohi, Wanfei Liu, Qiang Lin, Yuhui Zhao, Jingyao Zeng, Ali Alamer, Ibrahim O. Alanazi, Abdullah O. Alawad, Abdullah M. Al-Sadi, Songnian Hu, Jun Yu

published 13 Oct 2016

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The Complete Chloroplast Genome Sequence of a Relict Conifer Glyptostrobus pensilis: Comparative Analysis and Insights into Dynamics of Chloroplast Genome Rearrangement in Cupressophytes and Pinaceae

Zhaodong Hao, Tielong Cheng, Renhua Zheng, Haibin Xu, Yanwei Zhou, Meiping Li, Fengjuan Lu, Yini Dong, Xin Liu, Jinhui Chen, Jisen Shi

published 25 Aug 2016

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Ligand Similarity Complements Sequence, Physical Interaction, and Co-Expression for Gene Function Prediction

Matthew J. O’Meara, Sara Ballouz, Brian K. Shoichet, Jesse Gillis

published 28 Jul 2016

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A DNA Binding Protein Is Required for Viral Replication and Transcription in Bombyx mori Nucleopolyhedrovirus

Cui Zhao, Chen Zhang, Bin Chen, Yanghui Shi, Yanping Quan, Zuoming Nie, Yaozhou Zhang, Wei Yu

published 14 Jul 2016

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Fine-Mapping of Common Genetic Variants Associated with Colorectal Tumor Risk Identified Potential Functional Variants

Mengmeng Du, Shuo Jiao, Stephanie A. Bien, Manish Gala, Goncalo Abecasis, Stephane Bezieau, Hermann Brenner, Katja Butterbach, Bette J. Caan, Christopher S. Carlson, Graham Casey, Jenny Chang-Claude, David V. Conti, Keith R. Curtis, David Duggan, Steven Gallinger, Robert W. Haile, Tabitha A. Harrison, Richard B. Hayes, Michael Hoffmeister, John L. Hopper, Thomas J. Hudson, Mark A. Jenkins, Sébastien Küry, Loic Le Marchand, Suzanne M. Leal, Polly A. Newcomb, Deborah A. Nickerson, John D. Potter, Robert E. Schoen, Fredrick R. Schumacher, Daniela Seminara, Martha L. Slattery, Li Hsu, Andrew T. Chan, Emily White, Sonja I. Berndt, Ulrike Peters

published 05 Jul 2016

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Draft Genomes of Anopheles cracens and Anopheles maculatus: Comparison of Simian Malaria and Human Malaria Vectors in Peninsular Malaysia

Yee-Ling Lau, Wenn-Chyau Lee, Junhui Chen, Zhen Zhong, Jianbo Jian, Amirah Amir, Fei-Wen Cheong, Jia-Siang Sum, Mun-Yik Fong

published 27 Jun 2016

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Comparative Mt Genomics of the Tipuloidea (Diptera: Nematocera: Tipulomorpha) and Its Implications for the Phylogeny of the Tipulomorpha

Xiao Zhang, Zehui Kang, Meng Mao, Xuankun Li, Stephen L. Cameron, Herman de Jong, Mengqing Wang, Ding Yang

published 24 Jun 2016

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Quantitative RT-PCR Gene Evaluation and RNA Interference in the Brown Marmorated Stink Bug

Raman Bansal, Priyanka Mittapelly, Yuting Chen, Praveen Mamidala, Chaoyang Zhao, Andy Michel

published 04 May 2016

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ePIANNO: ePIgenomics ANNOtation tool

Chia-Hsin Liu, Bing-Ching Ho, Chun-Ling Chen, Ya-Hsuan Chang, Yi-Chiung Hsu, Yu-Cheng Li, Shin-Sheng Yuan, Yi-Huan Huang, Chi-Sheng Chang, Ker-Chau Li, Hsuan-Yu Chen

published 09 Feb 2016

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Genetic Diversity Affects the Daily Transcriptional Oscillations of Marine Microbial Populations

Irina N. Shilova, Julie C. Robidart, Edward F. DeLong, Jonathan P. Zehr

published 11 Jan 2016

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