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Functional genomics

Improving Microbial Genome Annotations in an Integrated Database Context

I-Min A. Chen, Victor M. Markowitz, [ ... ], Natalia N. Ivanova

De novo Sequence Assembly and Characterization of Lycoris aurea Transcriptome Using GS FLX Titanium Platform of 454 Pyrosequencing

Ren Wang, Sheng Xu, [ ... ], Bing Xia

Pan-Genomic Analysis Provides Insights into the Genomic Variation and Evolution of Salmonella Paratyphi A

Weili Liang, Yongbing Zhao, [ ... ], Biao Kan

Analysis of the complete genome sequence of Nocardia seriolae UTF1, the causative agent of fish nocardiosis: The first reference genome sequence of the fish pathogenic Nocardia species

Motoshige Yasuike, Issei Nishiki, [ ... ], Masaya Katoh

Insights from deconvolution of cell subtype proportions enhance the interpretation of functional genomic data

Yu Kong, Deepa Rastogi, [ ... ], Masako Suzuki

Phylogenetic Profiling: How Much Input Data Is Enough?

Nives Škunca, Christophe Dessimoz

Integrated genome-based probiotic relevance and safety evaluation of Lactobacillus reuteri PNW1

Kazeem Adekunle Alayande, Olayinka Ayobami Aiyegoro, [ ... ], Collins Njie Ateba

Re-Annotation Is an Essential Step in Systems Biology Modeling of Functional Genomics Data

Bart H. J. van den Berg, Fiona M. McCarthy, Susan J. Lamont, Shane C. Burgess

Complete Genome Sequence of Francisella tularensis Subspecies holarctica FTNF002-00

Ravi D. Barabote, Gary Xie, [ ... ], Michael P. Dempsey

Evolutionary Dynamics of the Ty3/Gypsy LTR Retrotransposons in the Genome of Anopheles gambiae

Jose Manuel C. Tubio, Marta Tojo, [ ... ], Nora J. Besansky

The Multipartite Mitochondrial Genome of Liposcelis bostrychophila: Insights into the Evolution of Mitochondrial Genomes in Bilateral Animals

Dan-Dan Wei, Renfu Shao, [ ... ], Jin-Jun Wang

iCopyDAV: Integrated platform for copy number variations—Detection, annotation and visualization

Prashanthi Dharanipragada, Sriharsha Vogeti, Nita Parekh

Targeted Genome-Wide Enrichment of Functional Regions

Periannan Senapathy, Ashwini Bhasi, [ ... ], Sakthivel Sadayappan

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