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Functional genomics

Genome-wide maps of distal gene regulatory enhancers active in the human placenta

Joanna Zhang, Corinne N. Simonti, John A. Capra

published 27 Dec 2018

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Genomic region detection via Spatial Convex Clustering

John Nagorski, Genevera I. Allen

published 11 Sep 2018

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Genomic analysis of an Argentinean isolate of Spodoptera frugiperda granulovirus reveals that various baculoviruses code for Lef-7 proteins with three F-box domains

María Leticia Ferrelli, Matías Luis Pidre, Pablo Daniel Ghiringhelli, Sofía Torres, María Laura Fabre, Tomás Masson, Maia Tatiana Cédola, Alicia Sciocco-Cap, Víctor Romanowski

published 22 Aug 2018

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Identification and annotation of breed-specific single nucleotide polymorphisms in Bos taurus genomes

Bartosz Czech, Magdalena Frąszczak, Magda Mielczarek, Joanna Szyda

published 01 Jun 2018

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A catalog of potential putative functional variants in psoriasis genome-wide association regions

Yan Lin, Lu Liu, Yujun Sheng, Changbing Shen, Xiaodong Zheng, Fusheng Zhou, Sen Yang, Xianyong Yin, Xuejun Zhang

published 01 May 2018

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iCopyDAV: Integrated platform for copy number variations—Detection, annotation and visualization

Prashanthi Dharanipragada, Sriharsha Vogeti, Nita Parekh

published 05 Apr 2018

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Sequence-based multiscale modeling for high-throughput chromosome conformation capture (Hi-C) data analysis

Kelin Xia

published 06 Feb 2018

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Genome analysis of a novel Group I alphabaculovirus obtained from Oxyplax ochracea

Jun Wang, Dianhai Hou, Qianran Wang, Wenhua Kuang, Lei Zhang, Jiang Li, Shu Shen, Fei Deng, Hualin Wang, Zhihong Hu, Manli Wang

published 01 Feb 2018

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Identification and validation of reference genes for gene expression analysis in Aphidius gifuensis (Hymenoptera: Aphidiidae)

Xue-Ke Gao, Shuai Zhang, Jun-Yu Luo, Chun-Yi Wang, Li-Min Lü, Li-Juan Zhang, Xiang-Zhen Zhu, Li Wang, Jin-Jie Cui

published 30 Nov 2017

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Enrichment of colorectal cancer associations in functional regions: Insight for using epigenomics data in the analysis of whole genome sequence-imputed GWAS data

Stephanie A. Bien, Paul L. Auer, Tabitha A. Harrison, Conghui Qu, Charles M. Connolly, Peyton G. Greenside, Sai Chen, Sonja I. Berndt, Stéphane Bézieau, Hyun M. Kang, Jeroen Huyghe, Hermann Brenner, Graham Casey, Andrew T. Chan, John L. Hopper, Barbara L. Banbury, Jenny Chang-Claude, Stephen J. Chanock, Robert W. Haile, Michael Hoffmeister, Christian Fuchsberger, Mark A. Jenkins, Suzanne M. Leal, Mathieu Lemire, Polly A. Newcomb, Steven Gallinger, John D. Potter, Robert E. Schoen, Martha L. Slattery, Joshua D. Smith, Loic Le Marchand, Emily White, Brent W. Zanke, Goncalo R. Abeçasis, Christopher S. Carlson, Ulrike Peters, Deborah A. Nickerson, Anshul Kundaje, Li Hsu, on behalf of GECCO and CCFR

published 21 Nov 2017

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Genome-scale identification of nucleosome organization by using 1000 porcine oocytes at different developmental stages

Chenyu Tao, Juan Li, Baobao Chen, Daming Chi, Yaqiong Zeng, Honglin Liu

published 23 Mar 2017

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Analysis of the complete genome sequence of Nocardia seriolae UTF1, the causative agent of fish nocardiosis: The first reference genome sequence of the fish pathogenic Nocardia species

Motoshige Yasuike, Issei Nishiki, Yuki Iwasaki, Yoji Nakamura, Atushi Fujiwara, Yoshiko Shimahara, Takashi Kamaishi, Terutoyo Yoshida, Satoshi Nagai, Takanori Kobayashi, Masaya Katoh

published 03 Mar 2017

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Functionally-focused algorithmic analysis of high resolution microarray-CGH genomic landscapes demonstrates comparable genomic copy number aberrations in MSI and MSS sporadic colorectal cancer

Hamad Ali, Milad S. Bitar, Ashraf Al Madhoun, Makia Marafie, Fahd Al-Mulla

published 23 Feb 2017

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