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Fitness epistasis

Integrating genomic epidemiology and deep mutational scanning data for prevalence forecasting of SARS-CoV-2 Omicron lineages

Zhong-yi Lei, Xiao-min Zhang, [ ... ], Ming Ni

Epi-SSA: A novel epistasis detection method based on a multi-objective sparrow search algorithm

Liyan Sun, Jingwen Bian, [ ... ], Linxuan Zheng

Effects of selection stringency on the outcomes of directed evolution

Berk A. Alpay, Michael M. Desai

SELVa: Simulator of evolution with landscape variation

Elena Nabieva, Georgii A. Bazykin

Lexical Landscapes as large in silico data for examining advanced properties of fitness landscapes

Victor A. Meszaros, Miles D. Miller-Dickson, C. Brandon Ogbunugafor

Epistasis detectably alters correlations between genomic sites in a narrow parameter window

Gabriele Pedruzzi, Igor M. Rouzine

The genetics and development of mandibles and hypopharyngeal sclerite and cornua in larvae of Drosophila gaucha

Eduardo Alvarez, Francisco Del Pino, Lilian Jara, Raúl Godoy-Herrera

Improving HybrID: How to best combine indirect and direct encoding in evolutionary algorithms

Lucas Helms, Jeff Clune

Upon Accounting for the Impact of Isoenzyme Loss, Gene Deletion Costs Anticorrelate with Their Evolutionary Rates

Christopher Jacobs, Luke Lambourne, Yu Xia, Daniel Segrè

Synonymous Co-Variation across the E1/E2 Gene Junction of Hepatitis C Virus Defines Virion Fitness

Brendan A. Palmer, Liam J. Fanning

Long-Range Epistasis Mediated by Structural Change in a Model of Ligand Binding Proteins

Erik D. Nelson, Nick V. Grishin

Mutations to Less-Preferred Synonymous Codons in a Highly Expressed Gene of Escherichia coli: Fitness and Epistatic Interactions

David J. Hauber, Dennis W. Grogan, Ronald W. DeBry

Correlated Evolution of Nucleotide Positions within Splice Sites in Mammals

Stepan Denisov, Georgii Bazykin, [ ... ], Mikhail Gelfand

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