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Fish genomics

Clonal spread of multidrug-resistant Salmonella Kentucky ST198 in poultry market environments in Dhaka city, Bangladesh

Md Abu Sayem Khan, Mahbub Arefin Rafi, Md Azad Hossen, Md. Majibur Rahman, Sabita Rezwana Rahman

published 03 Apr 2026

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Distribution and evolution of the LysR-type transcriptional regulators of the Salmonella genus

Dávila S., Rivera-Ramírez A., Gama-Martínez Y., Orozco R., Hernández V. M., Hernández-Lucas I.

published 17 Mar 2026

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Evolving threats: Leveraging C. elegans to decode the virulence profiles of highly related environmental Salmonella Newport isolates

Christina M. Ferreira, Mirae Choe, Bella Wayhs, Julie A. Haendiges, Robert Literman, Jianghong Meng, Arjuman Ghazi, Rebecca L. Bell

published 02 Mar 2026

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Exploring the genetic landscape of the Copper Homeostasis and Silver Resistance Island (CHASRI) in Salmonella enterica

Julie Haendiges, Eric W. Brown, Christina Ferreira, Maria Hoffmann, Elizabeth Reed, Jie Zheng, Rohan Tikekar

published 03 Nov 2025

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Evaluation of an alternative positive control strain of Salmonella enterica subsp. enterica serovar Typhimurium for microbial assays

Yu-Si Lee, Su-Hyeon Joung, Yongchjun Park, Seung Hwan Kim, Soon Han Kim, Insun Joo, Eun Sook An

published 04 Aug 2025

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Transient and resident Salmonella: A genomic approach to analyzing over a decade of sampling events from fish meal production and storage facilities

Johnathan Likens, Jon W. Bell, Patricia Rabideau, Stephanie Haynes, Steven Wilson, Sandra Tallent, Eric W. Brown, Julie Haendiges

published 01 Jul 2025

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Genomic analysis of Salmonella enterica from cattle, beef and humans in the Greater Tamale Metropolis of Ghana

Gabriel Temitope Sunmonu, Courage Kosi Setsoafia Saba, Erkison Ewomazino Odih, Opoku Bright, Eric Edem Y. Osei, Alfred Mensah, Saeed Abdallah, Abdul-Razak Alhassan, Stephen Wilson Kpordze, Olabisi C. Akinlabi, Anderson O. Oaikhena, Beverly Egyir, Iruka N. Okeke

published 18 Jun 2025

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Genomic insights into the serovar prevalence, antimicrobial resistance gene, and genetic diversity of Salmonella enterica in Mexico

Luis Lozano-Aguirre, Josefina Duran-Bedolla, Juan Téllez-Sosa, Cindy Fabiola Hernández-Pérez, Ismael Hernández-Lucas, Humberto Barrios-Camacho

published 15 May 2025

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Genome-wide SNPs reveal novel genetic relationships among Atlantic cod (Gadus morhua) from the south coast of Newfoundland, Canada (subdivision 3Ps), Northern cod stock complex, and Gulf of St Lawrence

Sarah Babaei, Divya A. Varkey, Aaron T. Adamack, Nathalie M. LeBlanc, Gregory N. Puncher, Geneviève J. Parent, Yanjun Wang, Sherrylynn Rowe, Cassidy C. D’Aloia, Scott A. Pavey

published 14 Mar 2025

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Highly sensitive molecular assay based on Identical Multi-Repeat Sequence (IMRS) algorithm for the detection of Trichomonas vaginalis infection

Clement Shiluli, Shwetha Kamath, Bernard N. Kanoi, Racheal Kimani, Bernard Oduor, Hussein M. Abkallo, Michael Maina, Harrison Waweru, Moses Kamita, Nicole Pamme, Joshua Dupaty, Catherine M. Klapperich, Srinivasa Raju Lolabattu, Jesse Gitaka

published 07 Feb 2025

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Genomic characterization of foodborne Salmonella enterica and Escherichia coli isolates from Saboba district and Bolgatanga Municipality Ghana

Gabriel Temitope Sunmonu, Frederick Adzitey, Erkison Ewomazino Odih, Boniface Awini Tibile, Rejoice Ekli, Martin Aduah, Anderson O. Oaikhena, Olabisi C. Akinlabi, Akebe Luther King Abia, Daniel Gyamfi Amoako, Iruka N. Okeke

published 07 Feb 2025

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Long-term genomic surveillance reveals the circulation of clinically significant Salmonella in lymph nodes and beef trimmings from slaughter cattle from a Mexican feedlot

Enrique Jesús Delgado-Suárez, Abril Viridiana García-Meneses, Elfrego Adrián Ponce-Hernández, Francisco Alejandro Ruíz-López, Cindy Fabiola Hernández-Pérez, Nayarit Emérita Ballesteros-Nova, Orbelín Soberanis-Ramos, María Salud Rubio-Lozano

published 18 Oct 2024

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Puzzle Hi-C: An accurate scaffolding software

Guoliang Lin, Zhiru Huang, Tingsong Yue, Jing Chai, Yan Li, Huimin Yang, Wanting Qin, Guobing Yang, Robert W. Murphy, Ya-ping Zhang, Zijie Zhang, Wei Zhou, Jing Luo

published 15 Jul 2024

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