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Fish genomics

Speeding genomic island discovery through systematic design of reference database composition

Steven L. Yu, Catherine M. Mageeney, Fatema Shormin, Noushin Ghaffari, Kelly P. Williams

published 13 Mar 2024

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A genome-wide collection of barcoded single-gene deletion mutants in Salmonella enterica serovar Typhimurium

Steffen Porwollik, Weiping Chu, Prerak T. Desai, Michael McClelland

published 07 Mar 2024

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Virulome analysis of Escherichia coli ST117 from bovine sources identifies similarities and differences with strains isolated from other food animals

Bradd J. Haley, Serajus Salaheen, Seon Woo Kim, Jo Ann Van Kessel

published 04 Jan 2024

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Hot alkaline lysis gDNA extraction from formalin-fixed archival tissues

Erin E. Hahn, Marina Alexander, Jiri Stiller, Peter M. Grewe, Clare E. Holleley

published 02 Jan 2024

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Genetic diversity of Salmonella enterica isolated over 13 years from raw California almonds and from an almond orchard

Anne-laure Moyne, Opeyemi U. Lawal, Jeff Gauthier, Irena Kukavica-Ibrulj, Marianne Potvin, Lawrence Goodridge, Roger C. Levesque, Linda J. Harris

published 07 Sep 2023

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Distinctive microbial community and genome structure in coastal seawater from a human-made port and nearby offshore island in northern Taiwan facing the Northwestern Pacific Ocean

Chi-Yu Shih, Shiow-Yi Chen, Chun-Ru Hsu, Ching-Hsiang Chin, Wei-Chih Chiu, Mei-Hung Chang, Lee-Kuo Kang, Cing-Han Yang, Tun-Wen Pai, Chin-Hwa Hu, Pang-Hung Hsu, Wen-Shyong Tzou

published 09 Jun 2023

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Draft genome of the bluefin tuna blood fluke, Cardicola forsteri

Lachlan Coff, Andrew J. Guy, Bronwyn E. Campbell, Barbara F. Nowak, Paul A. Ramsland, Nathan J. Bott

published 14 Oct 2022

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Genomic characterization of SARS-CoV-2 from vaccine breakthrough cases in Allegheny County, Pennsylvania

Kady D. Waggle, Marissa P. Griffith, Lei Zhu, Vaughn S. Cooper, Daniel J. Snyder, Vatsala Srinivasa, Tung Phan, Alan Wells, Graham M. Snyder, Daria Van Tyne, Lee H. Harrison, Jane W. Marsh

published 31 Aug 2022

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Evaluation of high molecular weight DNA extraction methods for long-read sequencing of Shiga toxin-producing Escherichia coli

Sandra Jaudou, Mai-Lan Tran, Fabien Vorimore, Patrick Fach, Sabine Delannoy

published 13 Jul 2022

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Effectiveness of blocking primers and a peptide nucleic acid (PNA) clamp for 18S metabarcoding dietary analysis of herbivorous fish

Chiho Homma, Daiki Inokuchi, Yohei Nakamura, Wilfredo H. Uy, Kouhei Ohnishi, Haruo Yamaguchi, Masao Adachi

published 20 Apr 2022

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Genomics of human and chicken Salmonella isolates in Senegal: Broilers as a source of antimicrobial resistance and potentially invasive nontyphoidal salmonellosis infections

Yakhya Dieye, Dawn M. Hull, Abdoul Aziz Wane, Lyndy Harden, Cheikh Fall, Bissoume Sambe-Ba, Abdoulaye Seck, Paula J. Fedorka-Cray, Siddhartha Thakur

published 24 Mar 2022

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Isolation, characterization and application of bacteriophage PSDA-2 against Salmonella Typhimurium in chilled mutton

Ziyu Sun, Mandlaa, Hui Wen, Li Ma, Zhongjun Chen

published 24 Jan 2022

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The pink salmon genome: Uncovering the genomic consequences of a two-year life cycle

Kris A. Christensen, Eric B. Rondeau, Dionne Sakhrani, Carlo A. Biagi, Hollie Johnson, Jay Joshi, Anne-Marie Flores, Sreeja Leelakumari, Richard Moore, Pawan K. Pandoh, Ruth E. Withler, Terry D. Beacham, Rosalind A. Leggatt, Carolyn M. Tarpey, Lisa W. Seeb, James E. Seeb, Steven J. M. Jones, Robert H. Devlin, Ben F. Koop

published 17 Dec 2021

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