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Exon mapping

Circular RNAs Are the Predominant Transcript Isoform from Hundreds of Human Genes in Diverse Cell Types

Julia Salzman, Charles Gawad, [ ... ], Patrick O. Brown

Fast Computation and Applications of Genome Mappability

Thomas Derrien, Jordi Estellé, [ ... ], Paolo Ribeca

Evaluating Gene Expression in C57BL/6J and DBA/2J Mouse Striatum Using RNA-Seq and Microarrays

Daniel Bottomly, Nicole A. R. Walter, [ ... ], Robert Hitzemann

Prediction and Quantification of Splice Events from RNA-Seq Data

Leonard D. Goldstein, Yi Cao, [ ... ], Robert Gentleman

Normalizing RNA-Sequencing Data by Modeling Hidden Covariates with Prior Knowledge

Sara Mostafavi, Alexis Battle, [ ... ], Daphne Koller

RNA-Seq Analyses Generate Comprehensive Transcriptomic Landscape and Reveal Complex Transcript Patterns in Hepatocellular Carcinoma

Qichao Huang, Biaoyang Lin, [ ... ], Zhi-Nan Chen

Consensus Rules in Variant Detection from Next-Generation Sequencing Data

Peilin Jia, Fei Li, [ ... ], Zhongming Zhao

Transcriptome Profiling of the Cancer, Adjacent Non-Tumor and Distant Normal Tissues from a Colorectal Cancer Patient by Deep Sequencing

Yan'an Wu, Xuetao Wang, [ ... ], Yi Huang

Detection and Removal of Biases in the Analysis of Next-Generation Sequencing Reads

Schraga Schwartz, Ram Oren, Gil Ast

Massive-Scale RNA-Seq Analysis of Non Ribosomal Transcriptome in Human Trisomy 21

Valerio Costa, Claudia Angelini, [ ... ], Alfredo Ciccodicola

Union Exon Based Approach for RNA-Seq Gene Quantification: To Be or Not to Be?

Shanrong Zhao, Li Xi, Baohong Zhang

RNA-Seq Profiling Reveals Novel Hepatic Gene Expression Pattern in Aflatoxin B1 Treated Rats

B. Alex Merrick, Dhiral P. Phadke, [ ... ], Raymond R. Tice

Alternative Promoters Influence Alternative Splicing at the Genomic Level

Dedong Xin, Landian Hu, Xiangyin Kong

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