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DNA structure

Text cryptography and steganography based on RNA sequences generation, true random number generators, and codebook method

Safwat Hamad, Omar Fitian Rashid, Hind M. Al-Dabbas

published 09 Dec 2025

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Two different and robustly modeled DNA binding modes of Competence Protein ComP - systematic modeling with AlphaFold 3, RoseTTAFold2NA, Chai-1 and re-docking in HADDOCK

Stian Aleksander Helsem, Kristian Alfsnes, Stephan A. Frye, Alexander Hesselberg Løvestad, Ole Herman Ambur

published 08 May 2025

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A method for site-specifically tethering the enzyme urease to DNA origami with sustained activity

Ian Murphy, Keren Bobilev, Daichi Hayakawa, Eden Ikonen, Thomas E. Videbæk, Shibani Dalal, Wylie W. Ahmed, Jennifer L. Ross, W. Benjamin Rogers

published 21 Apr 2025

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Deciphering the structural consequences of R83 and R152 methylation on DNA polymerase β using molecular modeling

Amit Srivastava, Haitham Idriss, Gobind Das, Sufian Abedrabbo, Mohd Sahir Shamsir, Dirar Homouz

published 12 Mar 2025

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Identification of critical amino acids in the DNA binding domain of LuxO: Lessons from a constitutive active LuxO

Shradha Surin, Richa Singh, Manpreet Kaur, Gourab Basu Choudhury, Himanshu Sen, Chetna Dureja, Saumen Datta, Saumya Raychaudhuri

published 17 Sep 2024

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A label-free G-quadruplex aptamer/gold nanoparticle-based colorimetric biosensor for rapid detection of bovine viral diarrhea virus genotype 1

Parisa Rabiei, Hassan Mohabatkar, Mandana Behbahani

published 30 Jul 2024

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Several supplementary concepts for applied category-theoretical states over an extended Petri net using an example relating to genetic coding: Toward an abstract algebraic formulation of molecular/genetic biology

Jitsuki Sawamura, Shigeru Morishita, Jun Ishigooka

published 07 Jun 2024

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Formamide denaturation of double-stranded DNA for fluorescence in situ hybridization (FISH) distorts nanoscale chromatin structure

Anne R. Shim, Jane Frederick, Emily M. Pujadas, Tiffany Kuo, I. Chae Ye, Joshua A. Pritchard, Cody L. Dunton, Paola Carrillo Gonzalez, Nicolas Acosta, Surbhi Jain, Nicholas M. Anthony, Luay M. Almassalha, Igal Szleifer, Vadim Backman

published 28 May 2024

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Building an ab initio solvated DNA model using Euclidean neural networks

Alex J. Lee, Joshua A. Rackers, Shivesh Pathak, William P. Bricker

published 15 Feb 2024

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The evolutionary loss of the Eh1 motif in FoxE1 in the lineage of placental mammals

Mahak Sharma, Victoria M. Larow, Nataliia Dobychina, Daniel S. Kessler, Maria M. Krasilnikova, Sergey Yaklichkin

published 27 Dec 2023

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DNAJB3 attenuates ER stress through direct interaction with AKT

Zeyaul Islam, Abdoulaye Diane, Namat Khattab, Mohammed Dehbi, Paul Thornalley, Prasanna R. Kolatkar

published 18 Aug 2023

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Multidimensional scaling methods can reconstruct genomic DNA loops using Hi-C data properties

Ryo Ishibashi

published 17 Aug 2023

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Gradient-mixing LEGO robots for purifying DNA origami nanostructures of multiple components by rate-zonal centrifugation

Jason Sentosa, Franky Djutanta, Brian Horne, Dominic Showkeir, Robert Rezvani, Chloe Leff, Swechchha Pradhan, Rizal F. Hariadi

published 19 Jul 2023

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