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DNA sequencing

Field-based detection of bacteria using nanopore sequencing: Method evaluation for biothreat detection in complex samples

Andrea D. Tyler, Jane McAllister, Helen Stapleton, Penny Gauci, Kym Antonation, David Thirkettle-Watts, Cindi R. Corbett

published 28 Nov 2023

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Adaptation of CUT&RUN for use in African trypanosomes

Geneva Miller, Lindsey M. Rollosson, Carrie Saada, Serenity J. Wade, Danae Schulz

published 21 Nov 2023

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Dataset of single nucleotide polymorphisms of immune-associated genes in patients with SARS-CoV-2 infection

Nikoletta Katsaouni, Pablo Llavona, Yascha Khodamoradi, Ann-Kathrin Otto, Stephanie Körber, Christof Geisen, Christian Seidl, Maria J. G. T. Vehreschild, Sandra Ciesek, Jörg Ackermann, Ina Koch, Marcel H. Schulz, Daniela S. Krause

published 16 Nov 2023

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The microRNA-mediated gene regulatory network in the hippocampus and hypothalamus of the aging mouse

Choijamts Munkhzul, Sun Shin Yi, Junhyung Kim, Seongsoo Lee, Hyuntae Kim, Jong-Seok Moon, Mihye Lee

published 09 Nov 2023

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Levodopa-induced dyskinesia in early-onset Parkinson’s disease (EOPD) associates with glucocerebrosidase mutation: A next-generation sequencing study in EOPD patients in Thailand

Sekh Thanprasertsuk, Prasit Phowthongkum, Thitipong Hopetrungraung, Chalalai Poorirerngpoom, Tikumphorn Sathirapatya, Patsorn Wichit, Onanong Phokaewvarangkul, Kornkiat Vongpaisarnsin, Saknan Bongsebandhu-phubhakdi, Roongroj Bhidayasiri

published 31 Oct 2023

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Rapid and collective determination of the complete “hot-spring frog” mitochondrial genome containing long repeat regions using Nanopore sequencing

Yuka Asaeda, Kento Shiraga, Makoto Suzuki, Yoshihiro Sambongi, Hajime Ogino, Takeshi Igawa

published 31 Oct 2023

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An invasive appetite: Combining molecular and stable isotope analyses to reveal the diet of introduced house mice (Mus musculus) on a small, subtropical island

Wieteke A. Holthuijzen, Elizabeth N. Flint, Stefan J. Green, Jonathan H. Plissner, Daniel Simberloff, Dagmar Sweeney, Coral A. Wolf, Holly P. Jones

published 19 Oct 2023

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Development of a one-step reverse transcription-quantitative polymerase chain reaction assay for the detection of porcine reproductive and respiratory syndrome virus

Hansong Chae, Hyun Soo Roh, Young Mi Jo, Won Gyeong Kim, Jeong Byoung Chae, Seung-Uk Shin, Jung Won Kang

published 16 Oct 2023

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Multigene panel next generation sequencing in metastatic colorectal cancer in an Australian population

Udit Nindra, Abhijit Pal, Vivienne Lea, Stephanie Hui-Su Lim, Kate Wilkinson, Ray Asghari, Tara L. Roberts, Therese M. Becker, Mahtab Farzin, Tristan Rutland, Mark Lee, Scott MacKenzie, Weng Ng, Bin Wang, C. Soon Lee, Wei Chua

published 05 Oct 2023

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Mitogenomic analysis and phylogenetic relationships of Agrilinae: Insights into the evolutionary patterns of a diverse buprestid subfamily

Xuyan Huang, Zhonghua Wei, Jiawei Lu, Aimin Shi

published 28 Sep 2023

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Shotgun metagenomics captures more microbial diversity than targeted 16S rRNA gene sequencing for field specimens and preserved museum specimens

Joseph D. Madison, Brandon C. LaBumbard, Douglas C. Woodhams

published 19 Sep 2023

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Performance and microbial community analysis on nitrate removal in a bioelectrochemical reactor

Han Li, Ying Cui, Fei Wang, Jinghua Li, Dafu Wu, Jing Fan

published 14 Sep 2023

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Quantification by droplet digital PCR and species identification by metabarcoding of environmental (e)DNA from Blainville’s beaked whales, with assisted localization from an acoustic array

Charles Scott Baker, Diane Claridge, Charlotte Dunn, Thomas Fetherston, Dorothy Nevé Baker, Holger Klinck, Debbie Steel

published 13 Sep 2023

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