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DNA labeling

DOGMA: de novo assembly of densely labelled optical DNA maps using a matrix profile approach

Albertas Dvirnas, Luis Mario Leal-Garza, Zahra Abbaspour, Erik Fröbrant, Karolin Frykholm, Marie Wrande, Linus Sandegren, Fredrik Westerlund, Tobias Ambjörnsson

published 01 Dec 2025

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Combining dense and sparse labeling in optical DNA mapping

Erik Torstensson, Gaurav Goyal, Anna Johnning, Fredrik Westerlund, Tobias Ambjörnsson

published 29 Nov 2021

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Specifically bound lambda repressor dimers promote adjacent non-specific binding

Suparna Sarkar-Banerjee, Sachin Goyal, Ning Gao, John Mack, Benito Thompson, David Dunlap, Krishnananda Chattopadhyay, Laura Finzi

published 02 Apr 2018

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Facilitated sequence assembly using densely labeled optical DNA barcodes: A combinatorial auction approach

Albertas Dvirnas, Christoffer Pichler, Callum L. Stewart, Saair Quaderi, Lena K. Nyberg, Vilhelm Müller, Santosh Kumar Bikkarolla, Erik Kristiansson, Linus Sandegren, Fredrik Westerlund, Tobias Ambjörnsson

published 09 Mar 2018

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A novel rapid and reproducible flow cytometric method for optimization of transfection efficiency in cells

Stefanie Homann, Christian Hofmann, Aleksandr M. Gorin, Huy Cong Xuan Nguyen, Diana Huynh, Phillip Hamid, Neil Maithel, Vahe Yacoubian, Wenli Mu, Athanasios Kossyvakis, Shubhendu Sen Roy, Otto Orlean Yang, Theodoros Kelesidis

published 01 Sep 2017

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Noise reduction in single time frame optical DNA maps

Paola C. Torche, Vilhelm Müller, Fredrik Westerlund, Tobias Ambjörnsson

published 22 Jun 2017

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Application of GelGreen™ in Cesium Chloride Density Gradients for DNA-Stable Isotope Probing Experiments

Jingfeng Gao, Kailing Pan, Hongyu Li, Xiaoyan Fan, Lixin Sun, Shujun Zhang, Yongqing Gao

published 05 Jan 2017

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Cell-Cycle Analyses Using Thymidine Analogues in Fission Yeast

Silje Anda, Erik Boye, Beata Grallert

published 13 Feb 2014

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A New Method of the Visualization of the Double-Stranded Mitochondrial and Nuclear DNA

Anna Ligasová, Dmytro Strunin, Karel Koberna

published 18 Jun 2013

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High Quality Genomic Copy Number Data from Archival Formalin-Fixed Paraffin-Embedded Leiomyosarcoma: Optimisation of Universal Linkage System Labelling

Abdulazeez Salawu, Aliya Ul-Hassan, David Hammond, Malee Fernando, Malcolm Reed, Karen Sisley

published 29 Nov 2012

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Molecular Basis for Modulation of the p53 Target Selectivity by KLF4

Tobias Brandt, Fiona M. Townsley, Daniel P. Teufel, Stefan M. V. Freund, Dmitry B. Veprintsev

published 30 Oct 2012

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DNA Fragmentation Simulation Method (FSM) and Fragment Size Matching Improve aCGH Performance of FFPE Tissues

Justin M. Craig, Natalie Vena, Shakti Ramkissoon, Ahmed Idbaih, Shaun D. Fouse, Memet Ozek, Aydin Sav, D. Ashley Hill, Linda R. Margraf, Charles G. Eberhart, Mark W. Kieran, Andrew D. Norden, Patrick Y. Wen, Massimo Loda, Sandro Santagata, Keith L. Ligon, Azra H. Ligon

published 15 Jun 2012

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Innate Structure of DNA Foci Restricts the Mixing of DNA from Different Chromosome Territories

Pedro Olivares-Chauvet, Dorota Fennessy, Dean A. Jackson, Apolinar Maya-Mendoza

published 21 Dec 2011

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