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DNA footprinting

Reproducible big data science: A case study in continuous FAIRness

Ravi Madduri, Kyle Chard, Mike D’Arcy, Segun C. Jung, Alexis Rodriguez, Dinanath Sulakhe, Eric Deutsch, Cory Funk, Ben Heavner, Matthew Richards, Paul Shannon, Gustavo Glusman, Nathan Price, Carl Kesselman, Ian Foster

published 11 Apr 2019

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ChIP-exo interrogation of Crp, DNA, and RNAP holoenzyme interactions

Haythem Latif, Stephen Federowicz, Ali Ebrahim, Janna Tarasova, Richard Szubin, Jose Utrilla, Karsten Zengler, Bernhard O. Palsson

published 17 May 2018

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An Unusual Phage Repressor Encoded by Mycobacteriophage BPs

Valerie M. Villanueva, Lauren M. Oldfield, Graham F. Hatfull

published 02 Sep 2015

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c-Myb Binding Sites in Haematopoietic Chromatin Landscapes

Mads Bengtsen, Kjetil Klepper, Sveinung Gundersen, Ignacio Cuervo, Finn Drabløs, Eivind Hovig, Geir Kjetil Sandve, Odd Stokke Gabrielsen, Ragnhild Eskeland

published 24 Jul 2015

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Pseudomonas putida Fis Binds to the lapF Promoter In Vitro and Represses the Expression of LapF

Andrio Lahesaare, Hanna Moor, Maia Kivisaar, Riho Teras

published 29 Dec 2014

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A Biochemical Characterization of the DNA Binding Activity of the Response Regulator VicR from Streptococcus mutans

Eduardo Ayala, Jennifer S. Downey, Lauren Mashburn-Warren, Dilani B. Senadheera, Dennis G. Cvitkovitch, Steven D. Goodman

published 17 Sep 2014

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CRP-Cyclic AMP Dependent Inhibition of the Xylene-Responsive σ⁵⁴-Promoter Pu in Escherichia coli

Yuan-Tao Zhang, Feng Jiang, Zhe-Xian Tian, Yi-Xin Huo, Yi-Cheng Sun, Yi-Ping Wang

published 23 Jan 2014

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Cell Density- and Quorum Sensing-Dependent Expression of Type VI Secretion System 2 in Vibrio parahaemolyticus

Li Wang, Dongsheng Zhou, Panyong Mao, Yiquan Zhang, Jun Hou, Yan Hu, Jin Li, Shaojie Hou, Ruifu Yang, Runhua Wang, Jingfu Qiu

published 15 Aug 2013

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Fur Is a Repressor of Biofilm Formation in Yersinia pestis

Fengjun Sun, He Gao, Yiquan Zhang, Li Wang, Nan Fang, Yafang Tan, Zhaobiao Guo, Peiyuan Xia, Dongsheng Zhou, Ruifu Yang

published 21 Dec 2012

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Genes for Carbon Metabolism and the ToxA Virulence Factor in Pseudomonas aeruginosa Are Regulated through Molecular Interactions of PtxR and PtxS

Abdelali Daddaoua, Sandy Fillet, Matilde Fernández, Zulema Udaondo, Tino Krell, Juan L. Ramos

published 23 Jul 2012

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Transcriptional Regulation of opaR, qrr2–4 and aphA by the Master Quorum-Sensing Regulator OpaR in Vibrio parahaemolyticus

Yiquan Zhang, Yefeng Qiu, Yafang Tan, Zhaobiao Guo, Ruifu Yang, Dongsheng Zhou

published 10 Apr 2012

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Mapping and Functional Characterisation of a CTCF-Dependent Insulator Element at the 3′ Border of the Murine Scl Transcriptional Domain

George A. Follows, Rita Ferreira, Mary E. Janes, Dominik Spensberger, Francesco Cambuli, Amy F. Chaney, Sarah J. Kinston, Josette R. Landry, Anthony R. Green, Berthold Göttgens

published 01 Mar 2012

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Microevolution of cis-Regulatory Elements: An Example from the Pair-Rule Segmentation Gene fushi tarazu in the Drosophila melanogaster Subgroup

Mohammed Bakkali

published 03 Nov 2011

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