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Disease surveillance

Correlation assessment of SARS-CoV-2 variants and their subvariants present in clinical and wastewater samples in Oregon, USA (February 7, 2021 - February 26, 2022) using the Freyja bioinformatics approach

Anirudh Bhatia, Justin Elser, Steven J. Carrell, Brent Kronmiller, Melissa Sutton, Christine Kelly, Tyler S. Radniecki

published 09 Sep 2026

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Methods for cost-efficient, whole genome sequencing surveillance for enhanced detection of outbreaks in a hospital setting

Kady D. Waggle, Marissa Pacey Griffith, Alecia B. Rokes, Vatsala Rangachar Srinivasa, Erin M. Nawrocki, Deena Ereifej, Rose Patrick, Hunter Coyle, Shurmin Chaudhary, Nathan J. Raabe, Kathleen Shutt, Alexander J. Sundermann, Vaughn S. Cooper, Lee H. Harrison, Lora Lee Pless

published 01 Sep 2026

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Seasonal and spatial trends of rickettsioses in Sri Lanka (2009–2023): Spatio-temporal analysis and climate-linked modeling

Nayana Gunathilaka, Deshaka Jayakody, Iranga Dilshan

published 27 Aug 2026

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An index-based system for early alerts of potential zoonotic disease outbreaks

Jaqueline S. Angelo, Livia Abdalla, Douglas A. Augusto, Marcia Chame, Eduardo Krempser

published 25 Aug 2026

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Addressing gaps in surveillance: Use of emergency department accessibility and social vulnerability to identify potential wastewater surveillance sites in North Carolina

Neha Shanker, Stacie Reckling, Nicole L. Snyder, Dianne Enright, Virginia T. Guidry, Ariel Christensen

published 17 Aug 2026

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A two-stage unified Bayesian framework for adolescent physical fitness surveillance in Sichuan, China: Latent factor measurement followed by spatiotemporal modeling

Honglei Wei, Haoran Li, Maowu Pu, Zhou He, Yiru Wang

published 11 Aug 2026

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Integrating disease mapping and flexible scan statistics to identify and visualize spatial clusters

Lina Wang, Haoqi Hu, Yaru Li, Danfei Zhang, Xiang Li, Zhengbin Zhang

published 05 Aug 2026

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Extended-spectrum beta-lactamase phenotype in Klebsiella pneumoniae isolates from Meta Department hospitals, Colombia, 2018–2022: A retrospective analytical cross-sectional study

Nancy Giovanna Cocunubo-Cocunubo, Norma Pavas-Escobar, Liliana Marcela Montilla Rodríguez, Fabiana Soto-Gutiérrez, Angie K. Rojas-Zapata, Laura Sánchez-Pabón, Laura Melissa López-Rincón, Norton Pérez-Gutiérrez

published 04 Aug 2026

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Multi-district molecular surveillance of dengue virus in Pakistan reveals serotype cycling and recurrent DENV-2 dominance, 2021–2025

Massab Umair, Rabia Hakim, Zunera Jamal, Qasim Ali, Muhammad Salman

published 23 Jul 2026

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Beyond traditional outbreak investigation: Using genomic data for enhanced detection of COVID-19 disease clusters in Utah

Mary Jewell, Abbey Marye, Bree Barbeau, Kelly Oakeson

published 08 Jul 2026

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Spatiotemporal dynamics of the 2025–26 measles resurgence in Mexico: A national scan‑statistic analysis

Oliver Mendoza-Cano, Xóchitl Trujillo, Mónica Ríos-Silva, Jaime Alberto Bricio-Barrios, Agustin Lugo-Radillo, Rosa Tapia-Vargas, Jesús Venegas-Ramírez, Eder Fernando Ríos-Bracamontes, Herguin Benjamin Cuevas-Arellano, Yolitzy Cárdenas, Raúl Aquino-Santos, Iris Anecxi Jiménez-Vieyra, Juan Manuel Uribe-Ramos, Verónica Benites-Godínez, Teresa Evangelina Martínez-Díaz, Mario López-Rojas, Annel García-Solórzano, José E. Velázquez-Amador, Efrén Murillo-Zamora

published 06 Jul 2026

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A multi-country qualitative evaluation of rapid mortality surveillance during the COVID-19 pandemic

Carlie Congdon, Farnaz Malik, Ruxana Jina, Diana Kumar, Philip W. Setel

published 06 Jul 2026

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Incidence of Dengue Fever in Pakistan

Zarmeen Nasim, Robert C. Reiner, Sana Sheikh, Nida Saddaf Khan, Mushyada Ali, Isbaah Tejani, Mirza Tayyab Mehmood, Javerya Hassan, Khalid Aziz, Joveria Farooqi, Najia Ghanchi, Erum Khan, Rafey Ali, Imran Ahmed Chauhadry, Aun Raza, Sadia Hassan, Faisal Sultan, Omar Chughtai, Hijab Batool, Ali Rehman, Mumtaz Ali Khan, Samuel Ostroff, Ali H. Mokdad, Nosheen Nasir, Zainab Samad, Bilal Ahmed Usmani

published 02 Jul 2026

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